Parental gene: | ENSPTRG00000039565 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 13:72939011..72957251(+) |
>ENSPTRG00000039565
ATGGCTACGAGGGTGCTGAGCATGAGCGCCCGCCTGGGACCCGTGCCCCAGCCGCCGGCGCCGCAGGACGAGCCCGTGTT
CGCGCAGCTCAAGCCGGTGCTGGGCGCCGCGAATCCGGCCCGCGACGCGGCGCTCTTCCCCGGCGAGGAGCTGAAGCACG
CGCACCACCGCCCGCGGCTGCCTCCAGAGGAGCTGGTCCAGACAAGATGTGAAATGGAGAAGTATCTGACACCTCAGCTT
CCTCCAGTTCCTATAATTCCAGAGCATAAAAAGTATAGACGAGACAGTGCCTCAGTCGTAGACCAGTTCTTCACTGACAC
TGAAGGGTTACCTTACAGTATCAACATGAACGTCTTCCTCCCTGACATCACTCACCTGAGAACTGGCCTCTACAAATCCC
AGAGACCGTGCGTAACACACATCAAGACAGAACCTGTTGCCATTTTCAGCCACCAGAGTGAAACGACTGCCCCTCCTCCG
GCCCCGACCCAGGCCCTCCCTGAGTTCACCAGTATATTCAGCTCACACCAGACCGCAGCTCCAGAGGTGAACAATATTTT
CATCAAACAAGAACTTCCTACACCAGATCTTCATCTTTCTGTCCCTCCCCAGCAGGGCCACCTGTACCAGCTACTGAATA
CACCGGATCTAGATATGCCCAGTTCTACAAATCAGACAGCAGCAATGGACACTCTTAATGTTTCTATGTCAGCTGCCATG
GCAGGCCTTAACACACACACCTCTGCTGTTCCGCAGACTGCAGTGAAACAATTCCAGGGCATGCCCCCTTGCACATACAC
AATGCCAAGTCAGTTTCTTCCACAACAGGCCACTTACTTTCCCCCGTCACCACCAAGCTCAGAGCCTGGAAGTCCAGATA
GACAAGCAGAGATGCTCCAGAATTTAACCCCACCTCCATCCTATGCTGCTACAATTGCTTCTAAACTGGCAATTCACAAT
CCAAATTTACCCACCACCCTGCCAGTTAACTCACAAAACATCCAACCTGTCAGATACAATAGAAGGAGTAACCCCGATTT
GGAGAAACGACGCATCCACTACTGCGATTACCCTGGTTGCACAAAAGTTTATACCAAGTCTTCTCATTTAAAAGCTCACC
TGAGGACTCACACTGGTGAAAAGCCATACAAGTGTACCTGGGAAGGCTGCGACTGGAGGTTCGCGCGATCGGATGAGCTG
ACCCGCCACTACCGGAAGCACACAGGCGCCAAGCCCTTCCAGTGCGGGGTGTGCAACCGCAGCTTCTCGCGCTCTGACCA
CCTGGCCCTGCATATGAAGAGGCACCAGAACTGA
ATGGCTACGAGGGTGCTGAGCATGAGCGCCCGCCTGGGACCCGTGCCCCAGCCGCCGGCGCCGCAGGACGAGCCCGTGTT
CGCGCAGCTCAAGCCGGTGCTGGGCGCCGCGAATCCGGCCCGCGACGCGGCGCTCTTCCCCGGCGAGGAGCTGAAGCACG
CGCACCACCGCCCGCGGCTGCCTCCAGAGGAGCTGGTCCAGACAAGATGTGAAATGGAGAAGTATCTGACACCTCAGCTT
CCTCCAGTTCCTATAATTCCAGAGCATAAAAAGTATAGACGAGACAGTGCCTCAGTCGTAGACCAGTTCTTCACTGACAC
TGAAGGGTTACCTTACAGTATCAACATGAACGTCTTCCTCCCTGACATCACTCACCTGAGAACTGGCCTCTACAAATCCC
AGAGACCGTGCGTAACACACATCAAGACAGAACCTGTTGCCATTTTCAGCCACCAGAGTGAAACGACTGCCCCTCCTCCG
GCCCCGACCCAGGCCCTCCCTGAGTTCACCAGTATATTCAGCTCACACCAGACCGCAGCTCCAGAGGTGAACAATATTTT
CATCAAACAAGAACTTCCTACACCAGATCTTCATCTTTCTGTCCCTCCCCAGCAGGGCCACCTGTACCAGCTACTGAATA
CACCGGATCTAGATATGCCCAGTTCTACAAATCAGACAGCAGCAATGGACACTCTTAATGTTTCTATGTCAGCTGCCATG
GCAGGCCTTAACACACACACCTCTGCTGTTCCGCAGACTGCAGTGAAACAATTCCAGGGCATGCCCCCTTGCACATACAC
AATGCCAAGTCAGTTTCTTCCACAACAGGCCACTTACTTTCCCCCGTCACCACCAAGCTCAGAGCCTGGAAGTCCAGATA
GACAAGCAGAGATGCTCCAGAATTTAACCCCACCTCCATCCTATGCTGCTACAATTGCTTCTAAACTGGCAATTCACAAT
CCAAATTTACCCACCACCCTGCCAGTTAACTCACAAAACATCCAACCTGTCAGATACAATAGAAGGAGTAACCCCGATTT
GGAGAAACGACGCATCCACTACTGCGATTACCCTGGTTGCACAAAAGTTTATACCAAGTCTTCTCATTTAAAAGCTCACC
TGAGGACTCACACTGGTGAAAAGCCATACAAGTGTACCTGGGAAGGCTGCGACTGGAGGTTCGCGCGATCGGATGAGCTG
ACCCGCCACTACCGGAAGCACACAGGCGCCAAGCCCTTCCAGTGCGGGGTGTGCAACCGCAGCTTCTCGCGCTCTGACCA
CCTGGCCCTGCATATGAAGAGGCACCAGAACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .97 RPM |
| SRP007412_cerebellum | 0 .68 RPM |
| SRP007412_heart | 1 .05 RPM |
| SRP007412_kidney | 2 .07 RPM |
| SRP007412_liver | 0 .36 RPM |
| SRP007412_testis | 20 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Choloepus hoffmanni | ENSCHOG00000009798 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000021146 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000016120 | ortholog_many2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000012850 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000021957 | other_paralog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_111 | 98.95 | 86.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_2968 | 97.88 | 86.50 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000039565 retrocopies