Parental gene: | Ap2b1, ENSRNOG00000009988 |
| Aliases: | None |
| Description: | AP-2 complex subunit beta [Source:UniProtKB/Swiss-Prot;Acc:P62944] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 10:70154032..70255794(+) |
>ENSRNOG00000009988
ATGACTGACTCCAAGTACTTCACAACCAATAAGAAGGGAGAAATCTTTGAATTAAAAGCTGAACTCAACAATGAAAAGAA
AGAAAAGAGGAAGGAGGCTGTGAAGAAAGTGATTGCTGCTATGACCGTGGGGAAGGATGTGAGCTCTCTCTTCCCAGATG
TGGTGAACTGTATGCAGACTGACAACCTGGAACTAAAGAAGCTTGTGTACCTCTATCTGATGAACTATGCCAAGAGTCAG
CCAGACATGGCCATCATGGCTGTCAACAGCTTTGTGAAGGATTGTGAAGACCCCAATCCTTTGATTCGAGCCTTGGCAGT
TAGAACCATGGGATGCATCCGGGTGGACAAGATTACAGAGTATCTCTGTGAACCCCTCCGCAAGTGCTTGAAGGATGAAG
ACCCCTATGTTCGGAAAACAGCAGCAGTATGCGTGGCAAAACTCCATGATATCAATGCCCAGATGGTGGAAGATCAGGGA
TTTCTGGATTCTCTGCGGGATCTCATAGCAGATTCAAACCCAATGGTGGTGGCTAATGCTGTAGCAGCATTGTCTGAGAT
CAGTGAGTCTCACCCAAACAGCAACTTACTTGATCTGAACCCTCAGAATATCAATAAGCTGCTCACAGCCCTGAATGAGT
GCACTGAGTGGGGCCAGATTTTCATCTTGGACTGCCTGTCTAATTACAACCCTAAAGATGACCGGGAAGCTCAGAGCATC
TGTGAGCGAGTGACGCCTCGGCTCTCTCATGCCAATTCTGCAGTGGTGCTTTCAGCAGTAAAAGTTCTGATGAAGTTTCT
AGAGTTGTTACCCAAGGACTCTGACTACTACAATATGCTGCTAAAGAAGCTAGCGCCTCCACTTGTCACTTTGCTCTCTG
GGGAGCCAGAAGTGCAGTATGTTGCCCTGAGGAACATCAACCTAATTGTCCAGAAAAGGCCTGAAATCTTGAAGCAGGAA
ATCAAGGTCTTCTTTGTGAAGTACAATGATCCTATCTATGTTAAACTAGAGAAGTTAGACATCATGATTCGTCTTGCATC
CCAAGCCAACATTGCTCAGGTTCTGGCAGAACTGAAGGAATATGCCACTGAAGTTGATGTGGACTTTGTTCGCAAAGCTG
TGAGGGCCATTGGACGGTGTGCCATCAAAGTGGAGCAATCAGCAGAACGCTGTGTGAGCACACTGCTTGATCTAATCCAG
ACCAAAGTAAATTATGTGGTCCAAGAGGCAATTGTTGTCATCAGGGACATCTTCCGAAAATACCCCAACAAGTATGAGAG
CATTATCGCCACGCTGTGTGAGAACTTGGACTCCCTGGATGAACCCGATGCCCGAGCGGCTATGATTTGGATTGTAGGAG
AGTATGCTGAAAGAATCGATAATGCCGATGAGTTACTAGAGAGCTTCCTGGAAGGTTTTCATGATGAAAGCACCCAGGTG
CAGCTCACGTTGCTTACCGCCATAGTGAAACTGTTTCTCAAGAAGCCATCAGAAACACAGGAGCTGGTCCAACAGGTCTT
GAGCTTGGCCACACAGGATTCTGATAATCCTGACCTTCGAGATCGGGGTTATATTTATTGGCGCCTTCTTTCAACTGACC
CTGTGACAGCCAAAGAAGTAGTGTTGTCTGAGAAGCCATTGATCTCTGAGGAAACAGACCTCATTGAACCTACCCTCCTG
GATGAGCTCATCTGCCACATTGGTTCTTTGGCCTCCGTGTACCATAAACCTCCGAATGCTTTTGTGGAAGGGAGCCATGG
CATTCATCGCAAACACTTGCCAATTCACCATGGGAGCACTGATGCAGGTGATAGCCCTGTTGGCACCACCACTGCAACCA
ACCTGGAACAGCCTCAGGTCATCCCCTCTCAAGGTGACCTTCTGGGGGATCTTTTAAATCTTGACCTGGGTCCCCCAGTG
AATGTCCCGCAAGTGTCCTCCATGCAGATGGGAGCAGTGGATCTTTTAGGAGGAGGACTGGATAGCCTGCTTGGCAGTGA
CCTTGGCGGGGGCATTGGAGGAAGTCCGGCAGTAGGACAGTCCTTCATCCCGTCATCAGTGCCTGCAACCTTCGCTCCTT
CACCTACTCCTGCTGTGGTCAGCAGTGGTCTGAATGACCTGTTTGAGCTTTCCACTGGGATAGGCATGGCACCTGGCGGA
TATGTGGCTCCTAAGGCAGTCTGGCTACCTGCTGTAAAGGCTAAAGGCTTGGAGATTTCGGGGACGTTTACTCACCGCCA
AGGGCACATCTATATGGAAATGAACTTCACCAACAAAGCTCTGCAGCACATGACGGATTTTGCCATCCAGTTTAACAAGA
ATAGCTTCGGTGTCATCCCGAGCACTCCCTTGGCCATACATACTCCGCTGATGCCAAACCAGAGCATTGATGTGTCTCTG
CCTCTCAACACCTTGGGCCCAGTCATGAAGATGGAGCCTCTGAATAACTTGCAGGTGGCTGTTAAAAACAATATTGATGT
CTTCTACTTCAGCTGCCTCATCCCACTCAATGTGCTTTTTGTAGAAGATGGCAAAATGGAACGCCAGGTCTTCCTTGCGA
CGTGGAAGGATATTCCCAATGAAAATGAGCTCCAATTTCAGATTAAGGAGTGTCATTTAAACGCTGACACAGTTTCCAGC
AAGTTGCAAAACAACAATGTTTACACTATCGCCAAGAGGAATGTGGAGGGGCAGGACATGCTGTACCAGTCCCTGAAGCT
CACTAATGGCATTTGGATTTTGGCAGAGCTGCGGATCCAGCCAGGAAACCCCAATTATACGCTGTCGCTGAAGTGTAGAG
CCCCTGAAGTCTCTCAGTACATCTATCAGGTCTACGACAGCATTTTGAAAAACTAA
ATGACTGACTCCAAGTACTTCACAACCAATAAGAAGGGAGAAATCTTTGAATTAAAAGCTGAACTCAACAATGAAAAGAA
AGAAAAGAGGAAGGAGGCTGTGAAGAAAGTGATTGCTGCTATGACCGTGGGGAAGGATGTGAGCTCTCTCTTCCCAGATG
TGGTGAACTGTATGCAGACTGACAACCTGGAACTAAAGAAGCTTGTGTACCTCTATCTGATGAACTATGCCAAGAGTCAG
CCAGACATGGCCATCATGGCTGTCAACAGCTTTGTGAAGGATTGTGAAGACCCCAATCCTTTGATTCGAGCCTTGGCAGT
TAGAACCATGGGATGCATCCGGGTGGACAAGATTACAGAGTATCTCTGTGAACCCCTCCGCAAGTGCTTGAAGGATGAAG
ACCCCTATGTTCGGAAAACAGCAGCAGTATGCGTGGCAAAACTCCATGATATCAATGCCCAGATGGTGGAAGATCAGGGA
TTTCTGGATTCTCTGCGGGATCTCATAGCAGATTCAAACCCAATGGTGGTGGCTAATGCTGTAGCAGCATTGTCTGAGAT
CAGTGAGTCTCACCCAAACAGCAACTTACTTGATCTGAACCCTCAGAATATCAATAAGCTGCTCACAGCCCTGAATGAGT
GCACTGAGTGGGGCCAGATTTTCATCTTGGACTGCCTGTCTAATTACAACCCTAAAGATGACCGGGAAGCTCAGAGCATC
TGTGAGCGAGTGACGCCTCGGCTCTCTCATGCCAATTCTGCAGTGGTGCTTTCAGCAGTAAAAGTTCTGATGAAGTTTCT
AGAGTTGTTACCCAAGGACTCTGACTACTACAATATGCTGCTAAAGAAGCTAGCGCCTCCACTTGTCACTTTGCTCTCTG
GGGAGCCAGAAGTGCAGTATGTTGCCCTGAGGAACATCAACCTAATTGTCCAGAAAAGGCCTGAAATCTTGAAGCAGGAA
ATCAAGGTCTTCTTTGTGAAGTACAATGATCCTATCTATGTTAAACTAGAGAAGTTAGACATCATGATTCGTCTTGCATC
CCAAGCCAACATTGCTCAGGTTCTGGCAGAACTGAAGGAATATGCCACTGAAGTTGATGTGGACTTTGTTCGCAAAGCTG
TGAGGGCCATTGGACGGTGTGCCATCAAAGTGGAGCAATCAGCAGAACGCTGTGTGAGCACACTGCTTGATCTAATCCAG
ACCAAAGTAAATTATGTGGTCCAAGAGGCAATTGTTGTCATCAGGGACATCTTCCGAAAATACCCCAACAAGTATGAGAG
CATTATCGCCACGCTGTGTGAGAACTTGGACTCCCTGGATGAACCCGATGCCCGAGCGGCTATGATTTGGATTGTAGGAG
AGTATGCTGAAAGAATCGATAATGCCGATGAGTTACTAGAGAGCTTCCTGGAAGGTTTTCATGATGAAAGCACCCAGGTG
CAGCTCACGTTGCTTACCGCCATAGTGAAACTGTTTCTCAAGAAGCCATCAGAAACACAGGAGCTGGTCCAACAGGTCTT
GAGCTTGGCCACACAGGATTCTGATAATCCTGACCTTCGAGATCGGGGTTATATTTATTGGCGCCTTCTTTCAACTGACC
CTGTGACAGCCAAAGAAGTAGTGTTGTCTGAGAAGCCATTGATCTCTGAGGAAACAGACCTCATTGAACCTACCCTCCTG
GATGAGCTCATCTGCCACATTGGTTCTTTGGCCTCCGTGTACCATAAACCTCCGAATGCTTTTGTGGAAGGGAGCCATGG
CATTCATCGCAAACACTTGCCAATTCACCATGGGAGCACTGATGCAGGTGATAGCCCTGTTGGCACCACCACTGCAACCA
ACCTGGAACAGCCTCAGGTCATCCCCTCTCAAGGTGACCTTCTGGGGGATCTTTTAAATCTTGACCTGGGTCCCCCAGTG
AATGTCCCGCAAGTGTCCTCCATGCAGATGGGAGCAGTGGATCTTTTAGGAGGAGGACTGGATAGCCTGCTTGGCAGTGA
CCTTGGCGGGGGCATTGGAGGAAGTCCGGCAGTAGGACAGTCCTTCATCCCGTCATCAGTGCCTGCAACCTTCGCTCCTT
CACCTACTCCTGCTGTGGTCAGCAGTGGTCTGAATGACCTGTTTGAGCTTTCCACTGGGATAGGCATGGCACCTGGCGGA
TATGTGGCTCCTAAGGCAGTCTGGCTACCTGCTGTAAAGGCTAAAGGCTTGGAGATTTCGGGGACGTTTACTCACCGCCA
AGGGCACATCTATATGGAAATGAACTTCACCAACAAAGCTCTGCAGCACATGACGGATTTTGCCATCCAGTTTAACAAGA
ATAGCTTCGGTGTCATCCCGAGCACTCCCTTGGCCATACATACTCCGCTGATGCCAAACCAGAGCATTGATGTGTCTCTG
CCTCTCAACACCTTGGGCCCAGTCATGAAGATGGAGCCTCTGAATAACTTGCAGGTGGCTGTTAAAAACAATATTGATGT
CTTCTACTTCAGCTGCCTCATCCCACTCAATGTGCTTTTTGTAGAAGATGGCAAAATGGAACGCCAGGTCTTCCTTGCGA
CGTGGAAGGATATTCCCAATGAAAATGAGCTCCAATTTCAGATTAAGGAGTGTCATTTAAACGCTGACACAGTTTCCAGC
AAGTTGCAAAACAACAATGTTTACACTATCGCCAAGAGGAATGTGGAGGGGCAGGACATGCTGTACCAGTCCCTGAAGCT
CACTAATGGCATTTGGATTTTGGCAGAGCTGCGGATCCAGCCAGGAAACCCCAATTATACGCTGTCGCTGAAGTGTAGAG
CCCCTGAAGTCTCTCAGTACATCTATCAGGTCTACGACAGCATTTTGAAAAACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 13 .92 RPM |
| SRP017611_kidney | 45 .50 RPM |
| SRP017611_brain | 102 .60 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000014853 | possible_ortholog | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000015777 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000002837 | possible_ortholog | 1 retrogene | |
| Mus musculus | ENSMUSG00000035152 | ortholog_one2one | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000013939 | ortholog_one2one | 2 retrogenes | |
| Pongo abelii | ENSPPYG00000008188 | ortholog_one2one | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000009021 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_574 | 98.15 | 92.32 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_1267 | 94.23 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000009988 retrocopies