Parental gene:

Phgdh, ENSRNOG00000019328

Aliases:None
Description:D-3-phosphoglycerate dehydrogenase [Source:UniProtKB/Swiss-Prot;Acc:O08651]
Organism:Rat (Rattus norvegicus)
Coordinates:2:219959693..219988834(-)


>ENSRNOG00000019328
ATGGCCTTCGCAAATCTGCGCAAAATACTCATCAGTGATAGCCTCGACCCCTGCTGCCGGAAGATCCTGCAAGATGGAGG
GCTGCAGGTGGTGGAGAAGCAGAACTTGAGCAAGGAGGAGCTGATAGCCGAACTCCAGGACTGTGAAGGCCTTATCGTCC
GGTCAGCTACTAAGGTCACTGCTGATGTCATCAATGCAGCAGAGAAGCTCCAGGTGGTGGGCAGGGCTGGTACAGGCGTG
GACAATGTGGATCTGGAGGCTGCCACAAGGAAGGGCGTCCTCGTCATGAACACCCCCAATGGAAATAGCCTCAGTGCTGC
GGAACTCACCTGTGGGATGCTCATGTGCCTGGCCAGGCAGATCCCCCAGGCGACGGCTTCGATGAAAGATGGCAAATGGG
ACCGGAAGAAGTTCATGGGGACAGAGCTGAACGGGAAGACACTGGGAATTCTTGGCCTGGGCAGAATTGGAAGAGAGGTG
GCCGCCCGAATGCAGGCCTTTGGAATGAAGACTGTAGGCTATGACCCCATCATTTCTCCAGAAGTCGCTGCCTCCTTTGG
TGTTCAGCAGCTGCCGCTAGAGGAGATCTGGCCTCTCTGTGATTTCATCACTGTCCATACCCCGCTCCTGCCCTCCACTA
CAGGCTTGCTCAATGACAGCACCTTTGCCCAGTGCAAGAAAGGCGTGCGGGTGGTGAACTGTGCTCGAGGAGGCATTGTG
GATGAAGGTGCCCTGCTCCGTGCCCTGCAGTCTGGTCAGTGTGCTGGTGCTGCACTGGATGTGTTTACAGAAGAGCCACC
ACGGGACCGGGCCTTAGTGGACCACGAGAACGTCATCAGCTGTCCCCACCTGGGCGCCAGCACCAAGGAGGCCCAGAGCC
GCTGTGGGGAGGAAATCGCAGTCCAGTTTGTGGACATGGTGAAGGGGAAATCTCTAACAGGGGTTGTAAACGCCCAGGCT
CTTACCAGTGCCTTCTCTCCACACACCAAGCCTTGGATTGGTCTGGCAGAAGCATTGGGCACACTGATGCACGCCTGGGC
TGGCTCCCCTAAAGGGACCATCCAGGTGGTGACACAAGGAACATCTCTGAAGAATGCTGGGACCTGCCTGAGCCCTGCGG
TCATTGTCGGCCTTCTGAGAGAAGCATCAAAACAGGCAGATGTGAACTTGGTGAACGCTAAGCTACTGGTGAAAGAGGCT
GGCCTCAATGTCACCACCTCCCACAGTCCTGGTGTCCCAGGAGAGCAGGGCATCGGGGAATGCCTCCTGACTGTGGCCTT
GGCAGGTGCCCCCTACCAAGCTGTGGGCTTGGTCCAGGGCACCACACCAATGTTGCAGATGCTCAACGGAGCTGTCTTCA
GGCCAGAGGTGCCTCTACGCAGGGGCCAGCCCCTGCTCCTGTTCCGGGCTCAGCCCTCCGACCCTGTCATGCTGCCCACT
ATGATCGGCCTACTGGCAGAGGCGGGGGTACAGCTGCTGTCCTACCAGACCTCCAAGGTGTCTGACGGAGACACTTGGCA
CGTCATGGGCCTCTCCTCCCTACTGCCCAGCCTGGACGCATGGAAGCAGCATGTTTCTGAGGCTTTCCAGTTCTGCTTCT
GA

Library Parental gene expression (RPM)
SRP017611_liver 1 .61 RPM
SRP017611_kidney 78 .37 RPM
SRP017611_brain 43 .28 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000019916 ortholog_one2many 4 retrogenes
retro_cjac_2894, retro_cjac_2958, retro_cjac_3441, retro_cjac_3994,
Myotis lucifugus ENSMLUG00000002986 ortholog_one2many 1 retrogene
retro_mluc_2502,
Mus musculus ENSMUSG00000053398 ortholog_one2many 16 retrogenes
retro_mmus_1008, retro_mmus_1223, retro_mmus_1384, retro_mmus_1708, retro_mmus_1835, retro_mmus_1892, retro_mmus_2057, retro_mmus_2169, retro_mmus_2889, retro_mmus_2979, retro_mmus_3021, retro_mmus_3176, retro_mmus_3180, retro_mmus_3217, retro_mmus_3441, retro_mmus_545,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_452 84.18 73.17
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Download FASTA sequences of all ENSRNOG00000019328 retrocopies