Parental gene:

GAPDH, ENSSTOG00000007538

Aliases:None
Description:glyceraldehyde-3-phosphate dehydrogenase [Source:HGNC Symbol;Acc:4141]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393519.1:1243300..1438075(-)


>ENSSTOG00000007538
ATGGTGAAGGTCGGAGTGAACGGATTTGGCCGTATTGGGCGCCTGGTCACCAGGGCTGCTTTCAACTCTGGCAAAGTGGA
AATTGTCGCTATCAATGACCCCTTCATTGACCTCAACTACATGGTTTACATGTTCCAGTATGATTCTACCCATGGTAAAT
TCCATGGCACAGTCAAGGCTGAGAATGGGAAGCTTGTTATCAACGGAAAGTCCATCTCCATCTTCCAGGAGCGAGATCCC
GCCAACATCAAATGGGGTGATGCTGGTGCTGAATATGTTGTGGAGTCCACTGGTGTCTTCACTACCATGGAGAAAGCCGG
GGCTCATTTGAAGGGTGGTGCCAAAAGGGTCATCATCTCTGCACCTTCTGCTGATGCCCCCATGTTTGTGATGGGTGTGA
ACCATGAGAAGTATGACAACTCCCTCAAGATTGTAAGCAATGCCTCCTGTACCACCAACTGCTTAGCCCCCCTGGCCAAG
GTCATCCATGACAACTTTGGCATTGTGGAAGGACTCATGACCACAGTCCATGCCATCACTGCTACTCAGAAGACTGTGGA
TGGCCCCTCTGGAAAACTGTGGCGTGATGGCCGTGGGGCTGCCCAGAATATCATCCCTGCATCCACTGGTGCTGCCAAGG
CTGTGGGCAAGGTCATCCCTGAACTGAATGGGAAGCTCACTGGCATGGCTTTCCGTGTGCCCACTCCCAATGTGTCAGTT
GTGGATCTGACCTGCCGCCTGGAGAAAGCTGCCAAGTACGATGACATCAAGAAGGTGGTGAAGCAGGCATCAGAGGGCCC
CCTCAAGGGCATCTTGGGCTACACGGAGGACCAGGTTGTCTCCTGCGACTTTAATAGTGATACCCACTCTTCCACTTTTG
ATGCTGGGGCCGGCATTGCCCTCAACGACCACTTTGTTAAGCTCATTTCCTGGTATGATAATGAATTTGGCTACAGCAAC
AGGGTGGTGGACCTTATGGTCCACATGGCCTCCAAGGAGTAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006675 possible_ortholog 5 retrogenes
Ailuropoda melanoleuca ENSAMEG00000014329 ortholog_one2one 35 retrogenes
Canis familiaris ENSCAFG00000015077 ortholog_one2many 4 retrogenes
Callithrix jacchus ENSCJAG00000008234 possible_ortholog 1 retrogene
Cavia porcellus ENSCPOG00000026350 possible_ortholog 1 retrogene
Equus caballus ENSECAG00000022051 ortholog_one2one 11 retrogenes
Felis catus ENSFCAG00000006874 ortholog_one2one 17 retrogenes
Gorilla gorilla ENSGGOG00000009553 possible_ortholog 30 retrogenes
Loxodonta africana ENSLAFG00000002780 ortholog_one2many 3 retrogenes
Myotis lucifugus ENSMLUG00000014320 ortholog_one2one 18 retrogenes
Macaca mulatta ENSMMUG00000018679 possible_ortholog 33 retrogenes
Monodelphis domestica ENSMODG00000018066 possible_ortholog 41 retrogenes
Mustela putorius furo ENSMPUG00000016891 ortholog_one2many 28 retrogenes
Mus musculus ENSMUSG00000057666 possible_ortholog 109 retrogenes
retro_mmus_1029, retro_mmus_1082, retro_mmus_1136, retro_mmus_1193, retro_mmus_1249, retro_mmus_1319, retro_mmus_1328, retro_mmus_136, retro_mmus_1365, retro_mmus_1371, retro_mmus_1467, retro_mmus_1474, retro_mmus_1480, retro_mmus_1615, retro_mmus_1692, retro_mmus_1721, retro_mmus_1728, retro_mmus_1886, retro_mmus_1922, retro_mmus_1957, retro_mmus_1983, retro_mmus_1985, retro_mmus_2009, retro_mmus_2020, retro_mmus_2030, retro_mmus_2100, retro_mmus_211, retro_mmus_2119, retro_mmus_2122, retro_mmus_2148, retro_mmus_2158, retro_mmus_2175, retro_mmus_2206, retro_mmus_2216, retro_mmus_2248, retro_mmus_2298, retro_mmus_2370, retro_mmus_2371, retro_mmus_2389, retro_mmus_2463, retro_mmus_2477, retro_mmus_2481, retro_mmus_2512, retro_mmus_2556, retro_mmus_2587, retro_mmus_2623, retro_mmus_2626, retro_mmus_2647, retro_mmus_2681, retro_mmus_2755, retro_mmus_2761, retro_mmus_2764, retro_mmus_2848, retro_mmus_2872, retro_mmus_2911, retro_mmus_2912, retro_mmus_2913, retro_mmus_2914, retro_mmus_2915, retro_mmus_2920, retro_mmus_2932, retro_mmus_2943, retro_mmus_300, retro_mmus_3036, retro_mmus_3064, retro_mmus_3120, retro_mmus_3137, retro_mmus_3140, retro_mmus_3148, retro_mmus_3151, retro_mmus_3188, retro_mmus_3193, retro_mmus_3197, retro_mmus_3216, retro_mmus_3228, retro_mmus_3306, retro_mmus_3335, retro_mmus_3336, retro_mmus_3357, retro_mmus_3377, retro_mmus_3445, retro_mmus_3514, retro_mmus_3575, retro_mmus_3650, retro_mmus_3658, retro_mmus_3693, retro_mmus_3716, retro_mmus_3814, retro_mmus_416, retro_mmus_437, retro_mmus_48, retro_mmus_553, retro_mmus_608, retro_mmus_619, retro_mmus_628, retro_mmus_635, retro_mmus_698, retro_mmus_745, retro_mmus_765, retro_mmus_766, retro_mmus_787, retro_mmus_811, retro_mmus_893, retro_mmus_914, retro_mmus_921, retro_mmus_946, retro_mmus_952, retro_mmus_976, retro_mmus_996,
Ornithorhynchus anatinus ENSOANG00000004492 ortholog_one2one 1 retrogene
Ochotona princeps ENSOPRG00000012514 ortholog_one2one 10 retrogenes
Procavia capensis ENSPCAG00000006928 ortholog_one2one 9 retrogenes
Pteropus vampyrus ENSPVAG00000012570 ortholog_one2one 14 retrogenes
Rattus norvegicus ENSRNOG00000018630 possible_ortholog 4 retrogenes
Rattus norvegicus ENSRNOG00000030638 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000014953 possible_ortholog 4 retrogenes
Xenopus tropicalis ENSXETG00000033975 ortholog_one2one 1 retrogene

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_419 90.37 65.47
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2. retro_itri_540 61.78 55.26
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3. retro_itri_752 75.00 64.56
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4. retro_itri_979 62.76 58.56
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5. retro_itri_1069 64.16 82.28
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6. retro_itri_1308 63.56 72.67
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7. retro_itri_1472 74.75 57.96
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8. retro_itri_1679 61.27 60.36
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9. retro_itri_1802 73.85 57.66
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Download FASTA sequences of all ENSSTOG00000007538 retrocopies