Parental gene: | MTR_3g434840 |
| Aliases: | None |
| Description: | pre-mRNA-splicing factor cwc22, putative |
| Organism: | Barrel medic (Medicago truncatula) |
| Coordinates: | 3:11335846..11342445(+) |
>MTR_3g434840
ATGGGTAGAGGCGAAGGAAGTGAATCGTCCGAGGAAGAAGGGCAGTTCGTCAGAAATCGTGAAGAGAAGCGAGACCGCCG
TGGAGCTGACGTGGAGGATCTTCGCCGGAAACATCGTGGTAGTGAAGATTTAGAGGAAGAAGTTGATCGAAAAAAGAATA
GGGATAGGGATAGGGATAACCGTCGAAGGTATAAGGGTTCTTCAGATGAAGAACGTGATGTGAAGAGAATTAGGGATAGG
GAAAGAAGGCATAGGGCTGATAGGGTTAGGGATAATGATAATGATAAGGAGAGAGATCGGCGTCGTCGGTATAAGGATGA
TTCGGATGAGGAATATGATAAGAAGAGGAATTTGGATAGGGAAAGGAGGCATAGAGTTGATAGGGATGATGATAATGATA
ATGAGAAGGACAGGAAGAGAGAGAGGGATCGACGCGATGACGATGATAGGAGGAATGTGGAGAGAAGGGATAGAGTTGAA
AAGAATGGTGGTGATAATGAGAGGGAAGAAAGTAAGAAGAAAGAGGAAGGAAGTGGGAGAGCGAGGACGGTGATACCGGC
AAGTGTGATAAATGGAGATGCATCTAAATTAGGGAAAAGTGGAGGGGTTTACATTCCCCCGTTTAAGTTAGCGAGGATGA
TGAAGGAAGTTGACGATAAGAGTAGTCCGGAGTATCAGAGGTTGACTTGGGATGCTTTAAGGAAGAGTATTAATGGATTG
GTGAATAAGGTGAATGCTACTAATATTACGAATATAATTCCGGAGTTGTTTGCGGAGAATTTGATTCGTGGAAGAGGGTT
GTTTTGTAGATCGTGTATGAAGTCACAGATGGCGTCACCCGGGTTTACGGATGTATTTGCTGCGATGGTTGCTGTTGTTA
ACACAAAGTTTCCCCAAGTTGGTGATCTTTTACTTAGGAGGATCGTTTTGCAGCTGAAAAGAGCGTATAAGCGTAATGAC
AAGCCTCAATTACTTGCTGCTGTGAAGTTTGTAGCACATTTGGTGAATCAGCAAGTGGCTCACGAGATTATCGCGCTAGA
GCTGCTCACGGTTTTACTCGAGAAGCCTTCCGATGACAGTGTTGAAGTGGCTGTTGGTTTTGTGACAGAAGTTGGCTCAA
TGCTGCAGGATCTCTCACCTAGAGGACTTCATGGTATCTTTGAGCGTTTTCGTGGAATTCTGCATGAAGGAGAAATTGAC
AAACGTGTTCAATTTCTAATTGAAGGATTATTTGCCATAAGAAAGGCAAAGTTTCAGGGTTATCCAGCTGTTCGGCCTGA
ACTTGACCTCGTGGAGCAGGAAGATCAGTTAACCCACGAAGTCTCCTTGGATGAGGAAATAGATCCCGAGACTTCCCTTG
ACATATTCAAACCTGACCCCAATTATCTGGAGAACGAGAAGCGTTATGAAGAGTTGAAGAAAACCTTGCTGGGTGAGGAA
GAGGAATCAGAGGGAGAGGAAGGCTCGGATGCTGAATCGGATGAAGATGATGAATCCGATGAAGAGGACGAGGAAGCTAT
GCAGATAAAAGATGAAACAGAGACTAATCTTGTCAATCTGCGGAGGACTATCTATCTAACAATAATGTCCAGTGTAGATT
TTGAGGAAGCAGGTCATAAGCTTCTAAAAATCCATCTTGAGCCAGGTCAAGAGATGGAATTGTGCACTATGCTTCTCGAA
TGTTGCAGCCAGGAGAGAACTTATCTCCGATATTACGGTCTTCTTGGGCAGCGTTTCTGCATGATTAACAAAGTTCATCA
AGAAAATTTTGAGAAGTGCTTCGTGCAGCAGTATTCATTGATCCACAGGCTCGAAACAAATAAATTGAGAAACGTGGCTA
AATTTTTTGCTCATTTGCTTGGGACTTTTGCTCTGCCTTGGCACGTCTTATCTTACATTCGCCTGACTGAGGACGACACA
ACTTCTTCTTCGCGTATATTTATTAAGATTCTCTTCCAGGAATTGTCAGAGCATCTAGGCATCCGGTTGCTAAATGAGAG
GTTAAATGATCCAACCATGCAGGATTCTTTTGAATCCATTTTTCCCAAGGACAACCCTAAAAACACACGATTCTGCATCA
ATTTTTTCACATCCATTGGTCTTGGTGGTCTTACTGAGAATCTGCGTGAGTATTTGAAAAATATGCCAAGGATGATCATG
CAACAACAGAAGCAAGTTTCAGATTCTGACTCGGATAAAAATTCTGCAAGCTCCGATTCATCAGATTCGGGAACCAGTTC
GGAGTCAGAGTCAAGTTCTGATGAAAGTGATAGAGAAAGAAGAAAACGTAGAAGAAAATAA
ATGGGTAGAGGCGAAGGAAGTGAATCGTCCGAGGAAGAAGGGCAGTTCGTCAGAAATCGTGAAGAGAAGCGAGACCGCCG
TGGAGCTGACGTGGAGGATCTTCGCCGGAAACATCGTGGTAGTGAAGATTTAGAGGAAGAAGTTGATCGAAAAAAGAATA
GGGATAGGGATAGGGATAACCGTCGAAGGTATAAGGGTTCTTCAGATGAAGAACGTGATGTGAAGAGAATTAGGGATAGG
GAAAGAAGGCATAGGGCTGATAGGGTTAGGGATAATGATAATGATAAGGAGAGAGATCGGCGTCGTCGGTATAAGGATGA
TTCGGATGAGGAATATGATAAGAAGAGGAATTTGGATAGGGAAAGGAGGCATAGAGTTGATAGGGATGATGATAATGATA
ATGAGAAGGACAGGAAGAGAGAGAGGGATCGACGCGATGACGATGATAGGAGGAATGTGGAGAGAAGGGATAGAGTTGAA
AAGAATGGTGGTGATAATGAGAGGGAAGAAAGTAAGAAGAAAGAGGAAGGAAGTGGGAGAGCGAGGACGGTGATACCGGC
AAGTGTGATAAATGGAGATGCATCTAAATTAGGGAAAAGTGGAGGGGTTTACATTCCCCCGTTTAAGTTAGCGAGGATGA
TGAAGGAAGTTGACGATAAGAGTAGTCCGGAGTATCAGAGGTTGACTTGGGATGCTTTAAGGAAGAGTATTAATGGATTG
GTGAATAAGGTGAATGCTACTAATATTACGAATATAATTCCGGAGTTGTTTGCGGAGAATTTGATTCGTGGAAGAGGGTT
GTTTTGTAGATCGTGTATGAAGTCACAGATGGCGTCACCCGGGTTTACGGATGTATTTGCTGCGATGGTTGCTGTTGTTA
ACACAAAGTTTCCCCAAGTTGGTGATCTTTTACTTAGGAGGATCGTTTTGCAGCTGAAAAGAGCGTATAAGCGTAATGAC
AAGCCTCAATTACTTGCTGCTGTGAAGTTTGTAGCACATTTGGTGAATCAGCAAGTGGCTCACGAGATTATCGCGCTAGA
GCTGCTCACGGTTTTACTCGAGAAGCCTTCCGATGACAGTGTTGAAGTGGCTGTTGGTTTTGTGACAGAAGTTGGCTCAA
TGCTGCAGGATCTCTCACCTAGAGGACTTCATGGTATCTTTGAGCGTTTTCGTGGAATTCTGCATGAAGGAGAAATTGAC
AAACGTGTTCAATTTCTAATTGAAGGATTATTTGCCATAAGAAAGGCAAAGTTTCAGGGTTATCCAGCTGTTCGGCCTGA
ACTTGACCTCGTGGAGCAGGAAGATCAGTTAACCCACGAAGTCTCCTTGGATGAGGAAATAGATCCCGAGACTTCCCTTG
ACATATTCAAACCTGACCCCAATTATCTGGAGAACGAGAAGCGTTATGAAGAGTTGAAGAAAACCTTGCTGGGTGAGGAA
GAGGAATCAGAGGGAGAGGAAGGCTCGGATGCTGAATCGGATGAAGATGATGAATCCGATGAAGAGGACGAGGAAGCTAT
GCAGATAAAAGATGAAACAGAGACTAATCTTGTCAATCTGCGGAGGACTATCTATCTAACAATAATGTCCAGTGTAGATT
TTGAGGAAGCAGGTCATAAGCTTCTAAAAATCCATCTTGAGCCAGGTCAAGAGATGGAATTGTGCACTATGCTTCTCGAA
TGTTGCAGCCAGGAGAGAACTTATCTCCGATATTACGGTCTTCTTGGGCAGCGTTTCTGCATGATTAACAAAGTTCATCA
AGAAAATTTTGAGAAGTGCTTCGTGCAGCAGTATTCATTGATCCACAGGCTCGAAACAAATAAATTGAGAAACGTGGCTA
AATTTTTTGCTCATTTGCTTGGGACTTTTGCTCTGCCTTGGCACGTCTTATCTTACATTCGCCTGACTGAGGACGACACA
ACTTCTTCTTCGCGTATATTTATTAAGATTCTCTTCCAGGAATTGTCAGAGCATCTAGGCATCCGGTTGCTAAATGAGAG
GTTAAATGATCCAACCATGCAGGATTCTTTTGAATCCATTTTTCCCAAGGACAACCCTAAAAACACACGATTCTGCATCA
ATTTTTTCACATCCATTGGTCTTGGTGGTCTTACTGAGAATCTGCGTGAGTATTTGAAAAATATGCCAAGGATGATCATG
CAACAACAGAAGCAAGTTTCAGATTCTGACTCGGATAAAAATTCTGCAAGCTCCGATTCATCAGATTCGGGAACCAGTTC
GGAGTCAGAGTCAAGTTCTGATGAAAGTGATAGAGAAAGAAGAAAACGTAGAAGAAAATAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Brachypodium distachyon | BRADI4G39400 | ortholog_one2one | 1 retrogene | |
| Sorghum bicolor | Sb03g029810 | ortholog_one2one | 1 retrogene | |
| Arabidopsis lyrata | scaffold_202963.1 | ortholog_one2many | 1 retrogene | |
| Solanum lycopersicum | Solyc04g079920.2 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mtru_18 | 72.62 | 57.31 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all MTR_3g434840 retrocopies