Parental gene:

TCM_025327

Aliases:None
Description:Eukaryotic release factor 1 (eRF1) family protein isoform 1
Organism:Cacao (Theobroma cacao)
Coordinates:5:31938617..31960586(+)


>TCM_025327
ATGAAAGTCGTACGCCGAGACCTCGTTCCCAACGGCCCCGGCAGCGTCAAGATGATACCGGTGGATTCAGATGATCTCTG
GTCTGTTTACAATTTGATAGCTACTGGAGATAGTGTTATGGCTCGAACCGTCAGGAAAGTTCTACGGGAGACAGCTGGTG
GAAGAGATGCAGAGCGTATTACTCTGAAGTTAGAAATCAAAGTTGAGGCAATAGATTATGACAAAGAAGGTTCTATCTTG
CGTATAAGGGGAAAGAACATACTGGAAAATGAACATGTTAAGATAGGAGCATTCCATACTCTAGAACTTGAGCTTCATCG
ACCTTTTGTATTGAGAAAGGATATTTGGGACTCATTGGCATTAGATGTACTCCAACAGGCCTCTGATCCTGGTGCAAGTG
CTGATCTGGCTGTGGTGTTAATGCAAGAAGGGTTAGCAAATATTTTGCTTGTTGGTAAAAGTATGACAAGTACTCGTTCA
CGGATTGAAACTTCAATTCCTCGCAAGCATGGACCTGCCATTGCCGGTTATGAGGCGGCTTTGAAGAAGTTCTTTGAGAA
TGTTCTACAGGCTTTCATGAAACATATTGATTTTAATGTTGTTCGCTGTGCTGTTATTGCAAGTCCTGGTTTCACAAAGG
ACCAGTTTCATCGTCATCTTTTATTGGAGGCAGAAAGAAGACAGCTGAGACCAATTATTGAGAATAAGTCACGAATAATT
CTTGTGCACACAAGCTCTGGATACAAGCATAGTTTGAGAGAAGTGCTTGATGCCCCAAATGTCATGAACATGATAAAAGA
TACCAAAGCAGCCCAAGAGGTCCGAGCTCTCAAAGATTTCTTCAGCATGCTTTCAAATGATCCAGCTCGTGCATGCTATG
GACCAAAACATGTGGAGATTGCCCATGAACGAATGGCAGTTCAAACCCTTCTTATTACAGATGATCTCTTCAGGAACTCT
GATATAGCTACGAGGCAAAAGTATGTCAATTTGGTAAACTCGGTTAAGGATTCAGGGGGCACTGCTCACATTTTTTCATC
AATGCACGTGTCAGGGGAACAACTGGCGCAGCTGACTGGTATTGCAGCAATCCTTCGTTTCCCTCTTCCGGATCTGGAAG
ACATTGAAATGTAA

Species Parental gene accession Homology type Retrogenes number
Arabidopsis thaliana AT4G27650 ortholog_one2many 1 retrogene
retro_atha_7,
Brassica oleracea Bo7g111550 ortholog_one2many 1 retrogene
retro_bole_15,
Brassica rapa Bra019037 ortholog_one2many 1 retrogene
retro_brap_29,
Aegilops tauschii F775_08238 ortholog_many2many 1 retrogene
retro_atau_9,
Hordeum vulgare MLOC_5075 ortholog_many2many 1 retrogene
retro_hvul_86,
Hordeum vulgare MLOC_54416 ortholog_many2many 1 retrogene
retro_hvul_87,
Vitis vinifera VIT_04s0023g00140 ortholog_one2one 1 retrogene
retro_vvin_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tcac_21 58.08 52.52
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Download FASTA sequences of all TCM_025327 retrocopies