Parental gene: | TCM_046769 |
| Aliases: | None |
| Description: | Leucine-rich repeat protein kinase family protein isoform 1 |
| Organism: | Cacao (Theobroma cacao) |
| Coordinates: | 4:29846927..29853652(+) |
>TCM_046769
ATGCAGCTCCCTCATTCTACCGATGTCATTGACACCCTACCGGAAAACCCGGACCGAAAACCCAACCAACAAAAGGAGGA
AAACGACGACGATGAAAATGACACCAACAGCACCGCCGTCACCTCCGCTGTCGACGGCGGAGCTGACAGCAACAACAACC
ATAGTAGTAGTGGTACGGTTGAAGACTCGGTTCTCGATGTTTCCGGGAAAAGCGTGGAGTTTTCGATATTGGAAGAGTCG
GGGGAGTCCGTGGACGGGCTTTATTTATACAAAAACGTGTTCAATTTGATTCCGAAATCAGTCGGGGCGTTTAGTCGGTT
AAGGAATTTGAAGTTTTTTGGAAACGAAATTAATTTGTTTCCGGCAGAGGTTGGGGGTTTGGTAGGATTAGAATGTTTGC
AGGTGAAGATATCGTCGCCGGGATTTAATGGAATGGCTTTAAGAAAGTTAAAAGGGTTGAAAGAGCTGGAACTTAGTCGG
GTTCCGCCTCGGCCTTCGGTTTTGACTCTGCTGAGTGAGATTGCCAGGCTTAAGTGCTTGACCAAGCTTTCTGTTTGTTA
TTTTTCCATTAGATACCTTCCTCCAGAAATTGGATGCTTAAAGAATTTGGAATATCTGGACCTTTCATTCAATAAGATAA
AGAGTTTGCCAATTGAAATTAGTAATTTGAATGACTTGATTTCATTGAAAGTTGCCAATAATAAATTGGTGGAACTACCC
TCGGGCTTGTCTTCATTACAAAGATTGGAGAACTTGGACTTATCAAATAATAGGTTGACGTCACTGGGGTCTCTTGAACT
TAGCCTTATGCATAATCTTCAGACTTTGAATCTTCAGTACAATAAACTTATAAGTTGTTCTCAAATACCTTCTTGGGTAC
ACTGCAATTTGGAAGGAAATGGCAAAGGCACATCCAGTGATGATTTCACCAGTTCTTCGGTTGAAATGGATGTGTATGAA
ACTGCTGCTCAGGATAGTGATGGAAGTGTTTCTTATAATGGCTCTCATAAGACCTCATCAGGTATCTTAACTGTTGCATT
GTCAAACAGTAGATGTTTTGCAACTCGGAGGTCAAGTAAACGATGGAAGAGGAGACATTATTTGCAACAAAGAGCTCGAC
AAGAACGTCTAAACAACAGCAGGAAGTGGAAAGGTGAAGGACATGCTGAAGTATTGACAATGAAGGCAGGTGGAGATGTA
CCAGGCAACAATGATGTCCCTACCTCTGACACTTGTGCAGAAGCTGCATCAGAAGTTGTGGGTGTAGATGATGACAAAAC
ATTATCATCATCAGAAGCCAAAGATGAAAAATTGGGTAGTGTTAGATATGAGGATGATACACTTACTTTGGAGAAGGGGT
TCTATGTAAAAAGTAGTACATCAGTTGGTCATGAGTCATTAAATAAAGGGAGTGAAGATAAATGTTCTCAGCTTGATGCA
TCCTTAGACCCTGTAGGAGAAGGAGCTATTGAGCAGGATGAAGGTTCATCCTCTGACATATGCAAGTCTAATTCTAAGTC
GAAAAGGCATTCTGATAGGGATCTTAATAATCCTAAACCATGCAAGTCTCGAAAACCAACAGATTATTGCTACAATTTAT
CACGAAAGTATAGTACTAATTCATTTTGTGGGACAGAAGACCACCTACCAGACGGCTTTTATGATGCCGGACGTGATCGG
CCCTTCATGCCATTGAGTAGATATGAGCAGACTTTTCATCTAGACTCTCGTGAAGTAATTCTTGTTGACAGGGAAAGAGA
TGAAGAGTTAGATGCAATTGCTCTCTCCGCTCAAGCTTTGGTATTTCATTTGAAGAACTTGAATGGTTTAGCAAAAGATA
GAGAGCGGGTTCCAGTTGATAACTTGCAGATAGCATCATTGCTTGCTCTTTTTGTATCGGATCATTTTGGAGGGAGTGAT
AGAAGTGGTATTGTAGAAAGGACACGAAAAGCACTATCTGGTTCTAACTACAAGAAGCCTTTCATTTGCACATGTTCAAC
TGGAAATGGTGACAGTGTTAGTGCATCTAACAAGACCTTGGATACTGTAGAAGATATTGTATTCTCTGAGCTCTGTGAGA
GATCTTTACGGTCAATAAAGTCCAGAAGGAACTCCATTGTTGTTCCTATAGGTACTCTTCAGTTCGGTGTCTGTAGACAC
AGAGCGCTGCTTATGAAGTATCTATGTGATCGGATGGAACCTCCAGTTCCTTGTGAGCTTGTTAGGGGCTACTTGGATTT
CATGCCACATGCCTGGAATATCATTCTTGTAAGGAGGGGTGATTCATGGGTTCGTATGGTGGTTGATGCTTGTCATCCGC
ATGATATACGAGAAGAGACGGATCCTGAATACTTTAGCAGATACATACCCCTCAGTCGAAAAAAAGCTTCTCTTAGAACG
GAAAGCACTCCTGTCTTCAGTTGTTCGTTTCCTTCTATGACCATAAGTGATGAAATTGAAAGAGTGGCTTCTAGTTCTCT
CATTCGATGCAAATATGGATCAATGGAGGCTGCAGCAAAGGTGCGCACTCTAGAAGTACTTGGTGCTTCACTTGATGAGG
TGAAAAATTTTGAGTACAGTTGCCTGGGAGAAGTAAGAATACTGGGTGCTTTGAAACACCCTTGCATAGTAGAAATGTAT
GGCCATCAAATATCTTCCAAGTGGATTCCTATAGGGGATGGAAAGTCAGAACATCGAATCTTGCAGTCTGCAATTTTGAT
GGAGTACATAAAAGGAGGATCTTTGAAGACTCATATTGAGAAACTAGCTGAAGCTGGTGAGAAGCATGTCCCTGTGGATT
TTGCATTGTGTATTGCACGAGATATTGCATCTGCATTGGTGGAGTTGCACTCAAAGCATGTTATTCATCGTGACATAAAA
AGCGAAAACATTCTGATTGATCTGGATGAGAAGAGAGTTGATGGAAGCCCTATTGTGAAGCTCTGTGATTTTGATAGAGC
AGTACCTCTTAGGTCTTTCCTGCATACATGTTGTATTGCTCATGTAGGGATACATCCTCCTAATGTTTGTGTTGGAACAC
CTCGCTGGATGGCTCCTGAGGTTCTGCGTGCAATGCATAAGCGAAATCAGTATGGACTGGAAGTGGACATTTGGTCATTT
GGATGCCTGCTTTATGAATTGTTGACTCTCCAAGTTCCTTATTCTGGATTATCAGAGCTACACATTCATGAACTTCTTCA
GATGGGCAAACGTCCAAGACTAACTGAAGAGCTGGAGGCGTTGGATTCATTGAGTGAGAGTGCAATGACCCAATCTGGGA
CAGAGCTTGATGGAAAAGAAGCTGAAGTAGATACACTTAGATTTCTTGTTGATGTCTTCTGTCGATGTACGGAGGAAAAT
CCAACCGATCGCCCAACAGCCAAAGAACTTTATGATATTTTGCTTGAACACACAAATGGTTTCAGGAATTCGAGTTAG
ATGCAGCTCCCTCATTCTACCGATGTCATTGACACCCTACCGGAAAACCCGGACCGAAAACCCAACCAACAAAAGGAGGA
AAACGACGACGATGAAAATGACACCAACAGCACCGCCGTCACCTCCGCTGTCGACGGCGGAGCTGACAGCAACAACAACC
ATAGTAGTAGTGGTACGGTTGAAGACTCGGTTCTCGATGTTTCCGGGAAAAGCGTGGAGTTTTCGATATTGGAAGAGTCG
GGGGAGTCCGTGGACGGGCTTTATTTATACAAAAACGTGTTCAATTTGATTCCGAAATCAGTCGGGGCGTTTAGTCGGTT
AAGGAATTTGAAGTTTTTTGGAAACGAAATTAATTTGTTTCCGGCAGAGGTTGGGGGTTTGGTAGGATTAGAATGTTTGC
AGGTGAAGATATCGTCGCCGGGATTTAATGGAATGGCTTTAAGAAAGTTAAAAGGGTTGAAAGAGCTGGAACTTAGTCGG
GTTCCGCCTCGGCCTTCGGTTTTGACTCTGCTGAGTGAGATTGCCAGGCTTAAGTGCTTGACCAAGCTTTCTGTTTGTTA
TTTTTCCATTAGATACCTTCCTCCAGAAATTGGATGCTTAAAGAATTTGGAATATCTGGACCTTTCATTCAATAAGATAA
AGAGTTTGCCAATTGAAATTAGTAATTTGAATGACTTGATTTCATTGAAAGTTGCCAATAATAAATTGGTGGAACTACCC
TCGGGCTTGTCTTCATTACAAAGATTGGAGAACTTGGACTTATCAAATAATAGGTTGACGTCACTGGGGTCTCTTGAACT
TAGCCTTATGCATAATCTTCAGACTTTGAATCTTCAGTACAATAAACTTATAAGTTGTTCTCAAATACCTTCTTGGGTAC
ACTGCAATTTGGAAGGAAATGGCAAAGGCACATCCAGTGATGATTTCACCAGTTCTTCGGTTGAAATGGATGTGTATGAA
ACTGCTGCTCAGGATAGTGATGGAAGTGTTTCTTATAATGGCTCTCATAAGACCTCATCAGGTATCTTAACTGTTGCATT
GTCAAACAGTAGATGTTTTGCAACTCGGAGGTCAAGTAAACGATGGAAGAGGAGACATTATTTGCAACAAAGAGCTCGAC
AAGAACGTCTAAACAACAGCAGGAAGTGGAAAGGTGAAGGACATGCTGAAGTATTGACAATGAAGGCAGGTGGAGATGTA
CCAGGCAACAATGATGTCCCTACCTCTGACACTTGTGCAGAAGCTGCATCAGAAGTTGTGGGTGTAGATGATGACAAAAC
ATTATCATCATCAGAAGCCAAAGATGAAAAATTGGGTAGTGTTAGATATGAGGATGATACACTTACTTTGGAGAAGGGGT
TCTATGTAAAAAGTAGTACATCAGTTGGTCATGAGTCATTAAATAAAGGGAGTGAAGATAAATGTTCTCAGCTTGATGCA
TCCTTAGACCCTGTAGGAGAAGGAGCTATTGAGCAGGATGAAGGTTCATCCTCTGACATATGCAAGTCTAATTCTAAGTC
GAAAAGGCATTCTGATAGGGATCTTAATAATCCTAAACCATGCAAGTCTCGAAAACCAACAGATTATTGCTACAATTTAT
CACGAAAGTATAGTACTAATTCATTTTGTGGGACAGAAGACCACCTACCAGACGGCTTTTATGATGCCGGACGTGATCGG
CCCTTCATGCCATTGAGTAGATATGAGCAGACTTTTCATCTAGACTCTCGTGAAGTAATTCTTGTTGACAGGGAAAGAGA
TGAAGAGTTAGATGCAATTGCTCTCTCCGCTCAAGCTTTGGTATTTCATTTGAAGAACTTGAATGGTTTAGCAAAAGATA
GAGAGCGGGTTCCAGTTGATAACTTGCAGATAGCATCATTGCTTGCTCTTTTTGTATCGGATCATTTTGGAGGGAGTGAT
AGAAGTGGTATTGTAGAAAGGACACGAAAAGCACTATCTGGTTCTAACTACAAGAAGCCTTTCATTTGCACATGTTCAAC
TGGAAATGGTGACAGTGTTAGTGCATCTAACAAGACCTTGGATACTGTAGAAGATATTGTATTCTCTGAGCTCTGTGAGA
GATCTTTACGGTCAATAAAGTCCAGAAGGAACTCCATTGTTGTTCCTATAGGTACTCTTCAGTTCGGTGTCTGTAGACAC
AGAGCGCTGCTTATGAAGTATCTATGTGATCGGATGGAACCTCCAGTTCCTTGTGAGCTTGTTAGGGGCTACTTGGATTT
CATGCCACATGCCTGGAATATCATTCTTGTAAGGAGGGGTGATTCATGGGTTCGTATGGTGGTTGATGCTTGTCATCCGC
ATGATATACGAGAAGAGACGGATCCTGAATACTTTAGCAGATACATACCCCTCAGTCGAAAAAAAGCTTCTCTTAGAACG
GAAAGCACTCCTGTCTTCAGTTGTTCGTTTCCTTCTATGACCATAAGTGATGAAATTGAAAGAGTGGCTTCTAGTTCTCT
CATTCGATGCAAATATGGATCAATGGAGGCTGCAGCAAAGGTGCGCACTCTAGAAGTACTTGGTGCTTCACTTGATGAGG
TGAAAAATTTTGAGTACAGTTGCCTGGGAGAAGTAAGAATACTGGGTGCTTTGAAACACCCTTGCATAGTAGAAATGTAT
GGCCATCAAATATCTTCCAAGTGGATTCCTATAGGGGATGGAAAGTCAGAACATCGAATCTTGCAGTCTGCAATTTTGAT
GGAGTACATAAAAGGAGGATCTTTGAAGACTCATATTGAGAAACTAGCTGAAGCTGGTGAGAAGCATGTCCCTGTGGATT
TTGCATTGTGTATTGCACGAGATATTGCATCTGCATTGGTGGAGTTGCACTCAAAGCATGTTATTCATCGTGACATAAAA
AGCGAAAACATTCTGATTGATCTGGATGAGAAGAGAGTTGATGGAAGCCCTATTGTGAAGCTCTGTGATTTTGATAGAGC
AGTACCTCTTAGGTCTTTCCTGCATACATGTTGTATTGCTCATGTAGGGATACATCCTCCTAATGTTTGTGTTGGAACAC
CTCGCTGGATGGCTCCTGAGGTTCTGCGTGCAATGCATAAGCGAAATCAGTATGGACTGGAAGTGGACATTTGGTCATTT
GGATGCCTGCTTTATGAATTGTTGACTCTCCAAGTTCCTTATTCTGGATTATCAGAGCTACACATTCATGAACTTCTTCA
GATGGGCAAACGTCCAAGACTAACTGAAGAGCTGGAGGCGTTGGATTCATTGAGTGAGAGTGCAATGACCCAATCTGGGA
CAGAGCTTGATGGAAAAGAAGCTGAAGTAGATACACTTAGATTTCTTGTTGATGTCTTCTGTCGATGTACGGAGGAAAAT
CCAACCGATCGCCCAACAGCCAAAGAACTTTATGATATTTTGCTTGAACACACAAATGGTTTCAGGAATTCGAGTTAG
No homologs available
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_tcac_15 | 67.28 | 56.94 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all TCM_046769 retrocopies