>retro_acar_113
ATGAACAGCGTGGGCTGTGGTGAGCTCAAGATATATTTCAAGAAGGCGACACCATTGACAAATGCTGCATTCTGAGATGC
TAGGCAAGGAAACTTGGTCCTCCTACAGCTGTTGTTGAACAGTGGGCATGCTGATGTGGACTGCAAAGACAGTCTTGTTC
AACAGTTCTTATGGTAGCATTGTTCTATGGCCACAAAGAATGTTTATGGGAATTGGTAATGAAAGTAGCTGATATTAATC
TTCAGAGAGAGACTGGTGTCACTGCTGTTCTTTACTGCACAACAAGGCCACAATGATATTTTGAAGTTACTCTTTGAGTA
TGAAGTCTCCACAGAGTTTAAAACCAAACATGGAGGCATTACTTTGTTAGTGGCTTGCCGATATGGACACGTAAGAGTAG
TGGAAATGTTACTAAAGCATGGCACCAACATCCACAATCAGCTTTATGATGGAGCTACTTCCCTTTTCTTGGCTGCTCAA
GAAGGATATATGGACTTAATTAAGTTATTACTGTCTTCAAGAGAAAAGGTCAATCAGCCAAGGTAGGACGGGACAGCTCT
ATTGTGGATTGTCTCTTAGATGGACCACAGTGAGATAATGTGAATAATGTTACTCCGAGGGACTGACCAAGATGTGGCAA
GAAGTGATGGCACAAACAACACTTTACTTAAAGCTGCAAACAAAGGATATAGTAGTGTTATAGAATAATTGCTTAAAGTC
TCCCCTTTATTTGGTTTACTGAAGAGCAGGACATCGGCTCTCCATGCTGCAGGTCTTAGTGGCAGAGTTAGAGCAATTGC
ACTACTCTTAGAAGCAGGAGCTGATCCATTCCTTAGAAAAAAGAAAAATGAGCTGCTTTCAGATCTCAAGAAAAATAAGT
GCATCCTGTGACTCCTGAAACTTAGAAAAAAGGACAGAAAAAGC
ORF - retro_acar_113 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
72.99 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
6 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MSSEGWAEFKMSFKKETPLANAAFWAARKGNLALLQLLLNSGRVDVDCKDSL-GSTALMVASYYGHKECV |
| M.S.G..E.K..FKK.TPL.NAAF..AR.GNL.LLQLLLNSG..DVDCKDSL..ST.LMVA..YGHKEC. |
Retrocopy | MNSVGCGELKIYFKKATPLTNAAF*DARQGNLVLLQLLLNSGHADVDCKDSL<CSTVLMVALFYGHKECL |
|
Parental | RELVLQGADINLQRETGATAL-FFAAQQGHNDIVKLLFEYGASTEFKTKDGGTALLAACQYGHMRVVETL |
| .ELV...ADINLQRETG.TA..F.A.Q.GHNDI.KLLFEY..STEFKTK.GG..LL.AC.YGH.RVVE.L |
Retrocopy | WELVMKVADINLQRETGVTAV>FTAQQ-GHNDILKLLFEYEVSTEFKTKHGGITLLVACRYGHVRVVEML |
|
Parental | LKHGANIHDQLYDGATALFLAAQGGYLDLIRLLLSSGAKVNQPRQDGTAPLWIASQMGHSEIVRVMLLRG |
| LKHG.NIH.QLYDGAT.LFLAAQ.GY.DLI.LLLSS..KVNQPR.DGTA.LWI.S.M.HSEI...MLLRG |
Retrocopy | LKHGTNIHNQLYDGATSLFLAAQEGYMDLIKLLLSSREKVNQPR*DGTALLWIVS*MDHSEIM*IMLLRG |
|
Parental | ADRDAARSDGT-TPLLKAANKGYSSVIEELLKFSPSLGLLKSGTTALHAAVLGGSVKVVALLLEAGADPF |
| .D.D.ARSDGT...LLKAANKGYSSVIE.LLK.SP..GLLKS.T.ALHAA.L.G.V...ALLLEAGADPF |
Retrocopy | TDQDVARSDGTNNTLLKAANKGYSSVIE*LLKVSPLFGLLKSRTSALHAAGLSGRVRAIALLLEAGADPF |
|
Parental | LRNKKNELPSDLTKNERILRLLQPREKDRKS |
| LR.KKNEL.SDL.KN..IL.LL..R.KDRKS |
Retrocopy | LRKKKNELLSDLKKNKCIL*LLKLRKKDRKS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .00 RPM |
5 .25 RPM |
SRP009831_brain |
0 .00 RPM |
15 .01 RPM |
SRP009831_dewlap |
0 .00 RPM |
18 .27 RPM |
SRP009831_embryo |
0 .00 RPM |
16 .83 RPM |
SRP009831_heart |
0 .00 RPM |
5 .29 RPM |
SRP009831_liver |
0 .00 RPM |
1 .88 RPM |
SRP009831_lung |
0 .00 RPM |
4 .18 RPM |
SRP009831_ovary |
0 .00 RPM |
20 .08 RPM |
SRP009831_skeletal_muscle |
0 .00 RPM |
2 .73 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_113 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_113 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.