RetrogeneDB ID: | retro_acar_120 | ||
Retrocopy location | Organism: | Anole lizard (Anolis carolinensis) | |
| Coordinates: | 4:59806038..59806446(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | HSD11B1L | ||
| Ensembl ID: | ENSACAG00000016952 | ||
| Aliases: | None | ||
| Description: | hydroxysteroid (11-beta) dehydrogenase 1-like [Source:HGNC Symbol;Acc:30419] |
Retrocopy-Parental alignment summary:
>retro_acar_120
ATGAGGGCTGCTGGGCTTCTGCTCTCAGTCATTGGCATTGTAGCCATTTGGGTGGCCTCTTGGAGAGACACCTTCGAGCC
AAGAGCCCAGGTTCTCTTGACCGGTGCCAGAGATGGGATCGGGGAACAAATGGCCTACCACTATGCCCAGTTCGGTGTGC
AAATCGTTCTCACTGCCCGGAGAAAGGTCATGCTGCAGAAAGTGATGGCCAAATGTCTGGAGCTGGGAGCCAAGAAGGCC
ATCTACTTCGTCGCAGATATGGCTTCTCCTGCTGAGCCAGAAAAGCTGATCCGTTTCACCTCGGAGCAATTTGGGGGTTT
GGATTTTGTGGTCCTCAACCATATTGGCACATCATCTTTTGAGATATGGGCTGGAGACATGGACCATCTGCGTTGGCTCA
TGCAGGTG
ORF - retro_acar_120 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 80.85 % |
| Parental protein coverage: | 60.26 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MRAAGLLLLVLGIAALWVAFSWRDTFEPGSLSGARVLLTGASDGIGEQMAYHYARFGAQIVLTARREAVL |
| MRAAGLLL.V.GI.A.WVA.SWRDTFEP.......VLLTGA.DGIGEQMAYHYA.FG.QIVLTARR...L | |
| Retrocopy | MRAAGLLLSVIGIVAIWVA-SWRDTFEPRA----QVLLTGARDGIGEQMAYHYAQFGVQIVLTARRKVML |
| Parental | QKVMAKCLELGAKKAVYFVADMASPTEPEKLVRFASEQLGGLDFVVLNHIGASPFEMWAGDVDHLRWLMQ |
| QKVMAKCLELGAKKA.YFVADMASP.EPEKL.RF.SEQ.GGLDFVVLNHIG.S.FE.WAGD.DHLRWLMQ | |
| Retrocopy | QKVMAKCLELGAKKAIYFVADMASPAEPEKLIRFTSEQFGGLDFVVLNHIGTSSFEIWAGDMDHLRWLMQ |
| Parental | V |
| V | |
| Retrocopy | V |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP009831_adrenal | 0 .00 RPM | 2 .49 RPM |
| SRP009831_brain | 0 .00 RPM | 3 .22 RPM |
| SRP009831_dewlap | 0 .00 RPM | 2 .32 RPM |
| SRP009831_embryo | 0 .00 RPM | 3 .82 RPM |
| SRP009831_heart | 0 .00 RPM | 7 .83 RPM |
| SRP009831_liver | 0 .00 RPM | 17 .92 RPM |
| SRP009831_lung | 0 .00 RPM | 3 .63 RPM |
| SRP009831_ovary | 0 .00 RPM | 1 .89 RPM |
| SRP009831_skeletal_muscle | 0 .00 RPM | 2 .26 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_120 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_120 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Anolis carolinensis | ENSACAG00000016952 | 1 retrocopy |
retro_acar_120 ,
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