RetrogeneDB ID: | retro_acar_123 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 4:106351316..106351760(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000005040 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 53.02 % |
Parental protein coverage: | 95.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MLLTVKALQGRECSLQVSPEERISSLKRLVSEKLNVPVSQQRLLFKGKALADEHRLSDYSIGPESKLNLV |
M.L.VK.L.G..C.LQVS..E.IS.LK.LVSE.L.VP..Q..LLF.GK.L...HRLSDYSIGPES.L.L. | |
Retrocopy | MQLKVKRLLGQQCCLQVSGHESISLLKSLVSEELKVPEDQTTLLFQGKVLDEDHRLSDYSIGPESVLYLA |
Parental | IKPPEKASPEESSRRAGFPQNPAIWHAVAQVLGRHFSGADAEKVLEQLQKDYERSLRLLSLDDIERLATR |
IK.P......E.S....F.Q....W....QVL..HF...DA.KVLE....DY..SL.LLSL..IE.LA.. | |
Retrocopy | IKKPQLTPLNEPSKPT-FAQAHSVWYQLSQVLENHFRTSDAIKVLERVVNDYYKSLGLLSLKNIEELARD |
Parental | LLHPEVAEA |
.L.P...EA | |
Retrocopy | ILNPKETEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .13 RPM | 79 .66 RPM |
SRP009831_brain | 0 .14 RPM | 88 .95 RPM |
SRP009831_dewlap | 0 .08 RPM | 101 .67 RPM |
SRP009831_embryo | 0 .06 RPM | 131 .80 RPM |
SRP009831_heart | 0 .26 RPM | 58 .06 RPM |
SRP009831_liver | 0 .00 RPM | 52 .44 RPM |
SRP009831_lung | 0 .15 RPM | 56 .62 RPM |
SRP009831_ovary | 0 .08 RPM | 102 .16 RPM |
SRP009831_skeletal_muscle | 0 .04 RPM | 42 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005040 | 1 retrocopy |
retro_acar_123 ,
|
Bos taurus | ENSBTAG00000014331 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016805 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012645 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000037250 | 1 retrocopy |