RetrogeneDB ID: | retro_acar_126 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 4:115276374..115276721(+) | ||
Located in intron of: | ENSACAG00000008779 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FKBP2 | ||
Ensembl ID: | ENSACAG00000000758 | ||
Aliases: | None | ||
Description: | Peptidyl-prolyl cis-trans isomerase [Source:UniProtKB/TrEMBL;Acc:H9G457] |
Percent Identity: | 75.21 % |
Parental protein coverage: | 80.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | RKLQIGVKKRVDNCPIKSRKGDVLHMHYLGKLEDGTEFDSSLARGQPFVFSLGTGQVIKGWDQGLLGMC- |
.KLQI.VKK.VDNCPIKS.K.DVL.MHYLGKLED.TEFD.SLA..QPFVFSL..GQVIK.W.QGLLG... | |
Retrocopy | QKLQIRVKKWVDNCPIKSCKVDVLCMHYLGKLEDRTEFDNSLAHNQPFVFSLEMGQVIKSWGQGLLGRA< |
Parental | EG--EKRKLVIPSELGYGDRGAPPKIPGGATLIFEVELLKIERRQEL |
EG..EK..LVIPSELGYG.R.AP.K.PG.A.LIFEVELLKIE..QEL | |
Retrocopy | EGEGEKGELVIPSELGYGNRAAPTKVPGRAMLIFEVELLKIEQQQEL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 62 .36 RPM |
SRP009831_brain | 0 .00 RPM | 149 .45 RPM |
SRP009831_dewlap | 0 .00 RPM | 52 .69 RPM |
SRP009831_embryo | 0 .00 RPM | 41 .82 RPM |
SRP009831_heart | 0 .00 RPM | 181 .69 RPM |
SRP009831_liver | 0 .00 RPM | 67 .04 RPM |
SRP009831_lung | 0 .00 RPM | 86 .59 RPM |
SRP009831_ovary | 0 .00 RPM | 53 .01 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 67 .78 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000000758 | 1 retrocopy |
retro_acar_126 ,
|
Bos taurus | ENSBTAG00000013606 | 3 retrocopies | |
Callithrix jacchus | ENSCJAG00000018124 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000002928 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000012945 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000021153 | 1 retrocopy |