>retro_acar_146
ATCATGAATATACAGAAAGGAACAACGCTGGTGGAGAGCATGAAGATCAACACCAAAGAAGAGCTGATCGTTGCCGGGTC
TCAGTCCGGCTCTATTCGCATCTGGGACCTGGAGGCTGCCAAAATTCTCCGCACCTTAATGGGCCACAAAGCCAACATCT
GAAGCCTGGACTTCCATCCGTTCGGGGGTTTCGTGGCCTCGGGATCCATGGACACCAACATTAAGCTTTGGGATGTGAGA
AGGAAAGGCTGCATCTTCAGGTACAAAGGCCACTCGCAGGCCGTCCGCTGCCTCCGCTTCAGCCCAGATGGGAAATGGCT
GGCGTCTTCCTCGGACAATCACACGGTGAAGCTCTGGGACCTGGCTGCTGGGAAGATCATGTTTGAGTTCGCGGGACACA
TGGGGCCAGTGAACATGGTGGAATTCCATCCCAACGAATACCTTTTGGCCTCGGGGAGCTCCGACAGAATGATCAGGTTC
TGGGACTTGGAGAAGTTCCAGGTGGTGAGCTGCATCGAGGAAGAGGCCACACCTGCCAGGTGCGTCCTCTTCAACCCAGA
CGGCTGCTGCCTCTTTGCCGGCTGCCAGGACACCCTGCGGGTTTACGGCTGGGAACCGGAGCGCTGCTTTGACGTAGTGC
CCATCAGCTGGGGCAAAGTGGCCGACCTCTCCATCTGCAACAACCAGCTGATCGGCGTCTCCTTCTCGCAAAGCGTGGTC
TCCTCCTTCGTGGTGGACCTCAACCGCGTCACCAGATCTGGCTCCGGCCTCCAGGGCCTGATCCGGGATGACCGACCCCT
CGCACAGCAGCTCCCAGCAACCGGATCCTCCCTGCGGCACATCTACGAACGGCCCTCCGCTGCATGCAGCAAACCTCAGC
GAGTCAAACACAACTCGGAGAGCGAGAGGCGCAGCCCCAGCAGCGAAGACGACCGGGAAGAGAAGGAATCCACCGCTGAA
ATCCAGAATGCAGAGGATTACCAAGAGATCTTCCAGCCAAAGAATTCCATCACCCGAACTCCTCCGCACAAGAGTGAGCC
TTTTCCTGCACCTCCGGAAGATGAACCACCGCCGGTTGCCAAAGAA
ORF - retro_acar_146 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
94.48 % |
Parental protein coverage: |
54.6 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | IMSLTGHTTPVESVKINTNEELIVAGSQSGSIRIWDLEAAKILRTLMGHKANICSLDFHPFGGFVASGSM |
| IM.....TT.VES.KINT.EELIVAGSQSGSIRIWDLEAAKILRTLMGHKANI.SLDFHPFGGFVASGSM |
Retrocopy | IMNIQKGTTLVESMKINTKEELIVAGSQSGSIRIWDLEAAKILRTLMGHKANI*SLDFHPFGGFVASGSM |
|
Parental | DTNIKLWDVRRKGCVFRYKGHSQAVRCLRFSPDGKWLASSSDDHTVKLWDLAAGKIMFEFAGHTGPVNMV |
| DTNIKLWDVRRKGC.FRYKGHSQAVRCLRFSPDGKWLASSSD.HTVKLWDLAAGKIMFEFAGH.GPVNMV |
Retrocopy | DTNIKLWDVRRKGCIFRYKGHSQAVRCLRFSPDGKWLASSSDNHTVKLWDLAAGKIMFEFAGHMGPVNMV |
|
Parental | EFHPNEYLLASGSSDRMIRFWDLEKFQVVSCIEEEATPARCVLFNPDGCCLFAGCQDALRVYGWEPERCF |
| EFHPNEYLLASGSSDRMIRFWDLEKFQVVSCIEEEATPARCVLFNPDGCCLFAGCQD.LRVYGWEPERCF |
Retrocopy | EFHPNEYLLASGSSDRMIRFWDLEKFQVVSCIEEEATPARCVLFNPDGCCLFAGCQDTLRVYGWEPERCF |
|
Parental | DVVPVSWSKVADLSICNNQLIGVSFSQSVVSSFVVDLNRVTRSGSGLQGLIRDDRPPAQQLPPTGSSLRR |
| DVVP.SW.KVADLSICNNQLIGVSFSQSVVSSFVVDLNRVTRSGSGLQGLIRDDRP.AQQLP.TGSSLR. |
Retrocopy | DVVPISWGKVADLSICNNQLIGVSFSQSVVSSFVVDLNRVTRSGSGLQGLIRDDRPLAQQLPATGSSLRH |
|
Parental | IYERPSTACSKPQRVKHNSESERRSPSSEDDREEKESTAEIQNPEDYQEIFQPKNSITRTPPHKSEPFPA |
| IYERPS.ACSKPQRVKHNSESERRSPSSEDDREEKESTAEIQN.EDYQEIFQPKNSITRTPPHKSEPFPA |
Retrocopy | IYERPSAACSKPQRVKHNSESERRSPSSEDDREEKESTAEIQNAEDYQEIFQPKNSITRTPPHKSEPFPA |
|
Parental | PPEDEPPPVAKE |
| PPEDEPPPVAKE |
Retrocopy | PPEDEPPPVAKE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
1 .54 RPM |
4 .79 RPM |
SRP009831_brain |
1 .56 RPM |
18 .27 RPM |
SRP009831_dewlap |
71 .46 RPM |
43 .33 RPM |
SRP009831_embryo |
12 .06 RPM |
66 .86 RPM |
SRP009831_heart |
0 .83 RPM |
25 .73 RPM |
SRP009831_liver |
0 .70 RPM |
4 .09 RPM |
SRP009831_lung |
0 .50 RPM |
14 .41 RPM |
SRP009831_ovary |
80 .31 RPM |
70 .58 RPM |
SRP009831_skeletal_muscle |
0 .73 RPM |
4 .22 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_146 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_146 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.