RetrogeneDB ID: | retro_acar_157 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343203.1:1196799..1197249(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDE6D | ||
Ensembl ID: | ENSACAG00000012101 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.33 % |
Parental protein coverage: | 97.39 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | EEEEERAKEILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQM |
.EEEE.AK.IL.GF.LN.M...DAET.KILWQGTED.S..GV.H...VPKKILKC.AVS.ELNFSSTE.M | |
Retrocopy | QEEEEQAKGILEGFNLN*MSPQDAETEKILWQGTEDVSISGVKHNSHVPKKILKC*AVSQELNFSSTEPM |
Parental | EKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPANVLTGNVIIETKFF-DDDLLV |
EKF.LEQKV.FKGQC.E..F.EFGFV.PNSTNTWQSLIEAAPES...PANVLT.N.IIETKFF....L.. | |
Retrocopy | EKF*LEQKVHFKGQCFEGRFSEFGFVTPNSTNTWQSLIEAAPESKIIPANVLTRNIIIETKFFNNNNLF* |
Parental | STSRVRLFYV |
S.SRVRLF.V | |
Retrocopy | SISRVRLFHV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 20 .28 RPM |
SRP009831_brain | 0 .00 RPM | 52 .69 RPM |
SRP009831_dewlap | 0 .00 RPM | 66 .36 RPM |
SRP009831_embryo | 0 .00 RPM | 32 .99 RPM |
SRP009831_heart | 0 .00 RPM | 37 .25 RPM |
SRP009831_liver | 0 .00 RPM | 19 .35 RPM |
SRP009831_lung | 0 .00 RPM | 27 .76 RPM |
SRP009831_ovary | 0 .00 RPM | 67 .53 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 16 .21 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000012101 | 1 retrocopy |
retro_acar_157 ,
|
Dasypus novemcinctus | ENSDNOG00000000568 | 1 retrocopy | |
Felis catus | ENSFCAG00000002232 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006427 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010403 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000004743 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000009165 | 1 retrocopy |