>retro_acar_18
ATGGAAAGCGATAAAAAGAATGAAGGCCTGAAAAGCCAACCCGATGAAGCACAGCAAACACATGGAAACAAGTGGCGTGT
TGTCGAAAATAATTTGCTCGAGCCTTCAATAGGAGGAGGCTCTCATGACGAATCTGAAAGGTGTACGGATGACGACGCGG
ATCTCCTCTTGGTTTGCTCTGAATGTGGGAAATGCTTCGTCCATCCGGCGGATCTTACGAAACACGAGAAAACTCATATC
GGAGGGGAAGAGGATCCAAAGCAATTGACTCGCAGCTCGGACCAAGTACTTCCTACGAGCGAATGTCCCTATAAATGTAA
AATTTGCGGAAATGCTTTCGAGAAGCGCGAGAGACTCGTCCAACATCAGAGGAAGCACGAGAAAAAGCCCTGCCAGTGCT
TGGAGTGCAAGAAAGCCTTTGGTGACGTCAAAACGCTTCAAGCGCATCAAAGGATGTATAGAAATATGAACGCTGAGCGC
AGAGAAAGCCGTAGCCAGCTTTTCAGCCTTTTCGCTTTTCAGAATATGTTTTTGGGTGAGAAAACTTACAAAGGCACAGA
GTCCGGGAAGCGGTTCAAAAGCAGGACGCTTCTTGAAGCACACCCGAGGATCCACACAAGCGAGAGGCCTTCTGAGCTTG
GAAGAAGCACTCCCATGAGCGAGAAAACCCGTGAAGGCCTGCAGAATGGGAAGAACGTCTCTCATCTCGCAAATCTTCAA
TCCAGTTTAAAGGCACATGCCGCGGAGAAGCGCTATGGCTGTCCCAAGTGCCCCAAGACCTTCGCTTCCAGGGAACAATC
TACATCCCACCAAAGGAATCACACATGCGAGAAACCTTATAAATGCCCCGACTGCGGGAAGAGCTTTGCCTGGATTTTTC
ACCTTAAGGCGCATCGGGCCATCCACGCGGCGGAGAAACCCTATAAATGCTCTGATTGTGGAGAAAGCTTCGTCCAGGAT
TCACATTTAAAGGCACACCAAAGAAAGCACACAGGAGAGAAGCCCTATAAATGCTCCGATTGTGGAGAAAGCTCCGTCCA
GGATTCACATTTAAAGGCACACCAAAGAAAGCACACAGGAGAGAAGCCCTATAAATGCTCCGACTGTGGGGAAAGCTTCG
TCCAGGATTCACATTTAAAGGCACACCAAAGAAAGCACACAGGAGAGAAGCCCTATAAATGCTCCGACTGTGGGGAAAGC
TTCGTCCAGGATTCACATTTCAAGGCACACCAAAGAACCCACCATGCAGGAGAGAAGCCCTACAAATGCTCCGACTGTGG
GGAAAGCTTCGTCCAGGATTCGCATTTAAAGGCACACCAAAGAACGCATACAGGAGAGAAACCCTATAAATGCTCCGACT
GTGGGGAAAGCTTCGTCCAGGATTCGCATTTAAAGGCACACCAAAGAACGCATAGAGGAGAGAAACCCTATAAATGCTCC
GACTGTGGGGAAAGCTTCGTCCAGGATTCACATTTAAAGGCACACCAAAGAACGCACCACGCAGGAGAGAAACCCTACAA
ATGCTCCGACTGTGGGGAAAGCTTCGTCCAGGATTCGCATTTAAAGGCACACCAAAGAACACACCATGCAGGAGAGAAAC
CCTACAAATGCTCCGATTGTGGAGAAAGCTTCGTCCAGGATTCACATTTAAAGGCACACCAAAGAAAGCACACAGGAGAG
AAGCCCTATAAATGCTCCGACTGTGGGGAAAGCTTCGTCCAGGATTCACATTTAAAGGCACACCAAAGAACGCACCACGC
AGGAGAGAAGCCCTACAAATGCTTAGGCTGCGGGAAGAGTTTCAGCCGCAGCTCAGAATGGAAGGAGCACCAACGAATCC
ACGCAAAGGAGAAGCCTTTTAAATGCCTGATAAATAACTGCGGAAAGGGGTTCTGCGGTGTGAAAAATCTCAAAAAGCAT
CAGAGGAATTTCCATCGGCAATCGACCGGTCCCAAGGAGTGA
ORF - retro_acar_18 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
57.18 % |
Parental protein coverage: |
86.18 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | NLNTHQRTHTGEKPYNCLECGQSFACSSGLRSHQRTHTGEKPYNCLECGQSFTQSSGLRVHQSTHTGEKP |
| NL......H..EK.Y.C..C...FA......SHQR.HT.EKPY.C..CG.SF.....L..H...H..EKP |
Retrocopy | NLQSSLKAHAAEKRYGCPKCPKTFASREQSTSHQRNHTCEKPYKCPDCGKSFAWIFHLKAHRAIHAAEKP |
|
Parental | YKCLECGQSFTRKGNLLTHQRTHTGEKPYKCLECGQSFVHSSSLRSHQMTHTGEKPCKCLECGQSFARSG |
| YKC..CG.SF.....L..HQR.HTGEKPYKC..CG.S.V..S.L..HQ..HTGEKP.KC..CG.SF.... |
Retrocopy | YKCSDCGESFVQDSHLKAHQRKHTGEKPYKCSDCGESSVQDSHLKAHQRKHTGEKPYKCSDCGESFVQDS |
|
Parental | ALRLHQSTHTGEKPYKCRECGQSFAHSSDLRSHQRTHHTGEKPYNCLECGQSFTQNSALRRHQRIHTGEK |
| .L..HQ..HTGEKPYKC..CG.SF...S....HQRTHH.GEKPY.C..CG.SF.Q.S.L..HQR.HTGEK |
Retrocopy | HLKAHQRKHTGEKPYKCSDCGESFVQDSHFKAHQRTHHAGEKPYKCSDCGESFVQDSHLKAHQRTHTGEK |
|
Parental | PYNCLECGQRFTQKGHLHSHQRTHTGEKPYNCLECGQSFTHSSGLRSHQWT-HTGEKPYKCLECGQSFAQ |
| PY.C..CG..F.Q..HL..HQRTH.GEKPY.C..CG.SF...S.L..HQ.T.H.GEKPYKC..CG.SF.Q |
Retrocopy | PYKCSDCGESFVQDSHLKAHQRTHRGEKPYKCSDCGESFVQDSHLKAHQRTHHAGEKPYKCSDCGESFVQ |
|
Parental | SGNLRSHQRT-HTGEKPYKCLECGQSFSHNSHLHRHQRTHTGEKPYKCLECGQSFAQSGNLRSHQRT-HT |
| ...L..HQRT.H.GEKPYKC..CG.SF...SHL..HQR.HTGEKPYKC..CG.SF.Q...L..HQRT.H. |
Retrocopy | DSHLKAHQRTHHAGEKPYKCSDCGESFVQDSHLKAHQRKHTGEKPYKCSDCGESFVQDSHLKAHQRTHHA |
|
Parental | GEKPYKCLECGQSFSHNSHLHRHQRTHTGEKPYKCL--ECGQSFARSGNLRSHQ |
| GEKPYKCL.CG.SFS..S....HQR.H..EKP.KCL...CG..F....NL..HQ |
Retrocopy | GEKPYKCLGCGKSFSRSSEWKEHQRIHAKEKPFKCLINNCGKGFCGVKNLKKHQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .00 RPM |
0 .07 RPM |
SRP009831_brain |
0 .09 RPM |
0 .80 RPM |
SRP009831_dewlap |
44 .84 RPM |
2 .95 RPM |
SRP009831_embryo |
0 .36 RPM |
0 .30 RPM |
SRP009831_heart |
0 .00 RPM |
0 .31 RPM |
SRP009831_liver |
0 .00 RPM |
0 .00 RPM |
SRP009831_lung |
0 .20 RPM |
0 .05 RPM |
SRP009831_ovary |
56 .02 RPM |
2 .20 RPM |
SRP009831_skeletal_muscle |
0 .04 RPM |
0 .04 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_18 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_18 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.