RetrogeneDB ID: | retro_acar_188 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343406.1:162990..163526(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000004685 | ||
Aliases: | None | ||
Description: | Ferritin [Source:UniProtKB/TrEMBL;Acc:H9G9D6] |
Percent Identity: | 82.22 % |
Parental protein coverage: | 77.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | TAMESQIRQNYHRDCEAAINRMVNMELYASYVYLSMSSYFDRDDVSLRHVAEFFRSQSHEEREHAEKLLK |
T.MESQIRQNYH..CEAAIN.M.NMELY.SY.YLSM.SYFD.DDVSL.HV.EFF.SQSHEE.EHAEKL.K | |
Retrocopy | TIMESQIRQNYHCSCEAAINFMANMELYTSYIYLSMLSYFDWDDVSLQHVTEFFLSQSHEEPEHAEKLMK |
Parental | FQSQRGGRVLLQDIKKPEKDSW-GKTVDAMEAALHLEKSVNQALLDLHRLASDQGDPHLCDFLETHYLDE |
FQS.RGG.VLLQDIKK.EKDSW.GKT.DAMEAALHLEKSVNQA.L.L.RLASDQGDPHLCDFLETHYLDE | |
Retrocopy | FQSRRGGWVLLQDIKKSEKDSW<GKTIDAMEAALHLEKSVNQAFLHLYRLASDQGDPHLCDFLETHYLDE |
Parental | QVKAIKVLGDYITNLRRLGADQSGLGEYLFDKHTLGESSS |
.VKAIKVLGDYI.NL..L..DQS..GEYLF.KHTL.ESSS | |
Retrocopy | RVKAIKVLGDYIANLQ*LESDQSWFGEYLFNKHTLWESSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 1416 .86 RPM |
SRP009831_brain | 0 .00 RPM | 249 .25 RPM |
SRP009831_dewlap | 0 .00 RPM | 478 .69 RPM |
SRP009831_embryo | 0 .00 RPM | 679 .75 RPM |
SRP009831_heart | 0 .00 RPM | 2035 .96 RPM |
SRP009831_liver | 0 .00 RPM | 703 .60 RPM |
SRP009831_lung | 0 .00 RPM | 3435 .43 RPM |
SRP009831_ovary | 0 .00 RPM | 565 .57 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 360 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000004685 | 1 retrocopy |
retro_acar_188 ,
|
Macropus eugenii | ENSMEUG00000011453 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000001863 | 5 retrocopies |