>retro_acar_19
ATGGAGGAGAAAGCATATAAATGTATCGAATGTGGAAAGAGCTTTAGTCAGCATGGAAAGCTGAAGAGACATCAAAGGAC
TCACACTGGGGAGAAACCCTATAACTCCCTCGAGTGTGGACAGAGCTTCACTGAGAAGGGAAGCTTACATAAACATCAAA
GGACTCACACTGGGGAGAAATCCTATAACTGCCTGGAGTGTGGACAGATCTTCAGTGATTGTTCAAGTCTACGTTCACAT
CAAAGGACCCACACTGGGGAGAAACCTTATAAATGCCTGGAGTGTGGACAGAGATTCTCTAATAATTCACATCTACATAG
ACATCAAAGGACTCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTTTGCTGTTAGTTCAGGTCTAC
GTTCACATCAAAAGACGCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTTTGCTGTTAGTTCAGGT
CTACGTTCACATCAAAAGACGCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTTCTCTCATAGTTC
AAACCTACATAGACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGATTCTCTAATA
ATTCACATCTACATAGACATCAAAGGACTCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTTTGCT
GTTAGTTCAGGTCTACGTTCACATCAAAAGACGCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTT
TGCTGTTAGTTCAGGTCTACGTTCACATCAAAAGACGCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGA
GCTTCTCTCATAATTCAAACCTACATAGACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGACTGTGGC
CAGAGCTTTGCTCGTAGTTCAGGTCTACGTATACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTG
TGGACAGAGCTTCACTCAGAGTTCAGGTCTACGTATACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGG
AGTGTGGACAGAGCTTCACTCAGAGTTCAGGTCTACGTATACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGC
CTGGAGTGTGGACAGAGCTTCACTCAGAGTTCAGGTCTACGTATACATCAAAGGATTCACACTGGGGAGAAACCCTATAC
ATGCCTGGAGTGTGGACAGAGCTTCATTCATAGTTCAGGCCTACGTAGACATCTAAGGACTCACACTGGGGAGAAACCCT
ATACATGCCTGCAGTGTGGACAGAGCTTTGCTCAGAGTAGAACTTTACGTTCCCATCAAAGGACTCACACTGGGGAGAAA
CCGTAG
ORF - retro_acar_19 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.67 % |
Parental protein coverage: |
62.22 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | YKCLECGQSFSHNSHLHRHQRTHTGEKPYNCLECGQSFSHSSSLRRHQRTHTGEKLYNCLECGQSFAHSS |
| YKC.ECG.SFS....L.RHQRTHTGEKPYN.LECGQSF....SL..HQRTHTGEK.YNCLECGQ.F...S |
Retrocopy | YKCIECGKSFSQHGKLKRHQRTHTGEKPYNSLECGQSFTEKGSLHKHQRTHTGEKSYNCLECGQIFSDCS |
|
Parental | GLRSHQRTHTGEKPYKCLECGQSFSHNLHLHRHQRTHTGEKPYNCLECGQSFAVSSGLRSHQRTHTGEKP |
| .LRSHQRTHTGEKPYKCLECGQ.FS.N.HLHRHQRTHTGEKPYNCLECGQSFAVSSGLRSHQ.THTGEKP |
Retrocopy | SLRSHQRTHTGEKPYKCLECGQRFSNNSHLHRHQRTHTGEKPYNCLECGQSFAVSSGLRSHQKTHTGEKP |
|
Parental | YKCLECGQSFAQSGHLRSHQRTHTGEKPYNCLECGQSFSDCLSLRSHQRTHTGEKPYKCLECGQSFSRNS |
| Y.CLECGQSFA.S..LRSHQ.THTGEKPYNCLECGQSFS....L..HQRTHTGEKPYKCLECGQ.FS.NS |
Retrocopy | YNCLECGQSFAVSSGLRSHQKTHTGEKPYNCLECGQSFSHSSNLHRHQRTHTGEKPYKCLECGQRFSNNS |
|
Parental | HLHRHQRTHTGEKPYNCLECGQSFTLKGNLQTHQRTHTGEKPYKCLECGQSFALSSALRRHQRTHTGEKP |
| HLHRHQRTHTGEKPYNCLECGQSF.....L..HQ.THTGEKPY.CLECGQSFA.SS.LR.HQ.THTGEKP |
Retrocopy | HLHRHQRTHTGEKPYNCLECGQSFAVSSGLRSHQKTHTGEKPYNCLECGQSFAVSSGLRSHQKTHTGEKP |
|
Parental | YNCLDCGQSFARSSGLRSHQKTHTGEKPYKCLECGQSFTQGGHLRSHERTHTGEKPYKCLECGQSFACSS |
| YNCL.CGQSF...S.L..HQ.THTGEKPYKCL.CGQSF.....LR.H.RTHTGEKPYKCLECGQSF..SS |
Retrocopy | YNCLECGQSFSHNSNLHRHQRTHTGEKPYKCLDCGQSFARSSGLRIHQRTHTGEKPYKCLECGQSFTQSS |
|
Parental | GLRSHQRTHTGEKPYNCLECGQSFIDCSTLRSHQRTHTGEKPYKCLECGQSFARSSGLCSHQRTHTGEKP |
| GLR.HQRTHTGEKPY.CLECGQSF...S.LR.HQRTHTGEKPYKCLECGQSF..SSGL..HQR.HTGEKP |
Retrocopy | GLRIHQRTHTGEKPYKCLECGQSFTQSSGLRIHQRTHTGEKPYKCLECGQSFTQSSGLRIHQRIHTGEKP |
|
Parental | YNCLECGQSFAHSSGLRSHQKTHTGEKPYKCLECGQSFTQGGHLRSHERTHTGEKP |
| Y.CLECGQSF.HSSGLR.H..THTGEKPY.CL.CGQSF.Q...LRSH.RTHTGEKP |
Retrocopy | YTCLECGQSFIHSSGLRRHLRTHTGEKPYTCLQCGQSFAQSRTLRSHQRTHTGEKP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
1 .12 RPM |
0 .20 RPM |
SRP009831_brain |
1 .80 RPM |
0 .33 RPM |
SRP009831_dewlap |
3 .12 RPM |
0 .76 RPM |
SRP009831_embryo |
3 .53 RPM |
0 .95 RPM |
SRP009831_heart |
1 .40 RPM |
0 .67 RPM |
SRP009831_liver |
0 .37 RPM |
0 .12 RPM |
SRP009831_lung |
0 .71 RPM |
0 .50 RPM |
SRP009831_ovary |
2 .12 RPM |
0 .77 RPM |
SRP009831_skeletal_muscle |
0 .22 RPM |
0 .04 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_19 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_19 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.