>retro_acar_202
TTTTTGACTTCAATCAAACAGGTTCTTCACTTTGCTTTACATATTCTGCCAGGGCATGTTCTTCTTCTTTGACTGCTTGT
TTTACTTGTAAGAGTCCTCTGCCCCCTGATCTTCTAGGCAGATATAGCCGGTTTGGCCATTAGGCATATTGATGCCCTCA
CTTTCAATGATTTTTCCCTTCTTCAATGCCACTGTCGAACATTTGTCCAAACCAAACTCCATGTTGATATCAGTGCTAAA
AAATCGGACAGTGTTGGTCAGAGACTGGATTTC
ORF - retro_acar_202 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
53.76 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | FLASASWTLYGLLLGDPYIAFMMPAVYLTTAVICPDIY-RPLAGDTLLFGNIYALTFNDFSLLRCHCRTF |
| FL.S....L...L...P..........L...V.CP.I.....AG..L....I.ALTFNDFSLL.CHCRTF |
Retrocopy | FLTSIKQVLHFALHILPGHVLLL*LLVLLVRVLCPLIF*ADIAG--LAIRHIDALTFNDFSLLQCHCRTF |
|
Parental | VQAKLHADISAKNSDSVSQRLDF |
| VQ.KLH.DISAK.SDSV.QRLDF |
Retrocopy | VQTKLHVDISAKKSDSVGQRLDF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .10 RPM |
1 .97 RPM |
SRP009831_brain |
0 .00 RPM |
0 .52 RPM |
SRP009831_dewlap |
0 .00 RPM |
2 .36 RPM |
SRP009831_embryo |
0 .00 RPM |
0 .98 RPM |
SRP009831_heart |
0 .00 RPM |
2 .33 RPM |
SRP009831_liver |
0 .00 RPM |
4 .38 RPM |
SRP009831_lung |
0 .10 RPM |
4 .68 RPM |
SRP009831_ovary |
0 .00 RPM |
4 .17 RPM |
SRP009831_skeletal_muscle |
0 .00 RPM |
0 .58 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_202 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_202 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.