>retro_acar_203
TCCAGTGCCCACAGGTTCATCGGAACACGCAAGCCCCCTCACCACGGCAAGGTGACAATCCATCGAGGGGGAATCATCTA
TCGGACAGATGGCAAGCTATTTAACCTCAGCAGACTGAGAGCCAAAACCAAGGTCACCACAACATCTGTTATAGAACTCC
AATATGCTGATGACAACGTAGTCTGTGCGCGTTCAGAAGAAGACCTACAAGCCACTCTAAACACCTTCGCAGAAGCATAC
GAGAAGCTCGGCCTCTCACTGAACATCGAGAAAACCAAAGTGCTCTTCCAACAGGCACCAGCTAATCCCTCTGCAAAGCC
AGGAATACAGCTTAACGGTGCAACATTAGAAAATGTTGACCATTTCCGCTACCTTGGTAGCCACCTCTCCACAAAAGTCA
ACATCGACACTGAAATACAACACCGCCTGAGCTCTGCGAGTGCAGCATTTTTCCGTATGAAGCAGAGAGTGTTTGATGAC
CGGGACATCCGTAGAGAGACCAAGGTGCTTGTTTATAAAGCCATTGTC
ORF - retro_acar_203 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.68 % |
Parental protein coverage: |
78.38 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SNTHIYIYTHRVSNITKILQYIDTVQY--NGKLFNLSRQKAKTKVTTTSVIELQYADDNVICAHSEEDLQ |
| S..H..I.T.......K.........Y...GKLFNLSR..AKTKVTTTSVIELQYADDNV.CA.SEEDLQ |
Retrocopy | SSAHRFIGTRKPPHHGKVTIHRGGIIYRTDGKLFNLSRLRAKTKVTTTSVIELQYADDNVVCARSEEDLQ |
|
Parental | ATLNTFAEAYKKLVLSLNIEKTKVLFQQAPANPSAVPGIQLNGVTLENVDHFRYLGSHLSTKVNIDTEIQ |
| ATLNTFAEAY.KL.LSLNIEKTKVLFQQAPANPSA.PGIQLNG.TLENVDHFRYLGSHLSTKVNIDTEIQ |
Retrocopy | ATLNTFAEAYEKLGLSLNIEKTKVLFQQAPANPSAKPGIQLNGATLENVDHFRYLGSHLSTKVNIDTEIQ |
|
Parental | HRLSSASAAFFRMKQKVFDDWDIRRETKVLVYKAIV |
| HRLSSASAAFFRMKQ.VFDD.DIRRETKVLVYKAIV |
Retrocopy | HRLSSASAAFFRMKQRVFDDRDIRRETKVLVYKAIV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .00 RPM |
0 .00 RPM |
SRP009831_brain |
0 .00 RPM |
0 .00 RPM |
SRP009831_dewlap |
0 .00 RPM |
0 .00 RPM |
SRP009831_embryo |
0 .00 RPM |
0 .00 RPM |
SRP009831_heart |
0 .00 RPM |
0 .00 RPM |
SRP009831_liver |
0 .00 RPM |
0 .00 RPM |
SRP009831_lung |
0 .00 RPM |
0 .00 RPM |
SRP009831_ovary |
0 .00 RPM |
0 .00 RPM |
SRP009831_skeletal_muscle |
0 .00 RPM |
0 .00 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_203 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_203 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.