>retro_acar_207
AAGACGCGTCGGCCTGTGCCGGGGAGGGCTCAGCGCAAGAGACCCGCCAGCGACAGGGAGTCCGGGGAGAGTAGTGATGA
AAGCAGTACGGTCGTCAGGAAGGAGAGAAAAAAATAAATTTCCAATGCTATGACTCAGAAGACTTCATATGGCACAAGCA
GTAGTGCTTATGAGGGCAAGCCTGAAGGAATTGGAGTGGCCTATAAGTTTACAAGATCTATGAAACCTGTAGGTCCCGAG
GACATGGGAGCGACAGCTGTATATGAGCTGGACACTGAGAAGGAGAATGATGCCCAAGCCATCTTTGAATGCAGCAAACA
AATTCAGAACAAACTTAGAGGAAAAGAAGATGATAAGATTTATCGTGGGATCAATAATTACCAAAAGTATGTAAAGCCAA
AAGATACGTCCATGGGAAATGCTTCATCAGGCATGGTAAGGAAGGGACCTATACGAGCCCCAGAGCACTTCAGGGCCACT
GTATGGTGGAACTATCAACCTGATATCTGTAAAGGCTACAAAGAAACTGGGTTTTGTGGCTTTGGAGATAGCTGTAAATT
TCTCCACGATCAATCAGACTACAAGCATGGGTGGCAAATTGAGCAAGAGTTGGATGAAGGATGCTATGGAGTTAACGATG
ATGAAAACTATGAAGTTAGCAGTGATGATGAAGACCTTCCTTTCAAGTGTTTCATTTGCAGAAATTCCTTCAAGAACCCT
GTGGTGACCAAGTGTAAACACTACTTCTGTGAGAGCTGTGCCCTGCAACATTATCGCAAATCTCAAAGGTGTTGTGTGTG
TGACAAACAAACAAATGGTGTCTTCAACCCAGCTAAA
ORF - retro_acar_207 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.93 % |
Parental protein coverage: |
89.42 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RAQRKRPASDRESGESSDESSTVVRKERKKEISNPMIQKTKKSVKDNTSYGTSSSDDEGKPEGIGVAYKS |
| ...R..P.........SD..S.....E....................TSYGTSSS..EGKPEGIGVAYK. |
Retrocopy | KTRRPVPGRAQRKRPASDRESGESSDESSTVVRKERKK*ISNAMTQKTSYGTSSSAYEGKPEGIGVAYKF |
|
Parental | TRSAKPVGPEDMGATAVYELDTEKENDAQAIFERSQQIQNELRGKEDDKIYRGINNYQKYVKPKDTSMGN |
| TRS.KPVGPEDMGATAVYELDTEKENDAQAIFE.S.QIQN.LRGKEDDKIYRGINNYQKYVKPKDTSMGN |
Retrocopy | TRSMKPVGPEDMGATAVYELDTEKENDAQAIFECSKQIQNKLRGKEDDKIYRGINNYQKYVKPKDTSMGN |
|
Parental | ASSGMVRKGPIRAPEHLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQIERELDEGRYG |
| ASSGMVRKGPIRAPEH.RATV.W.YQPDICK.YKETGFCGFGDSCKFLHD.SDYKHGWQIE.ELDEG.YG |
Retrocopy | ASSGMVRKGPIRAPEHFRATVWWNYQPDICKGYKETGFCGFGDSCKFLHDQSDYKHGWQIEQELDEGCYG |
|
Parental | VNDDENYEVSSDDEDLPFKCFICRNSFKNPVVTKCKHYFCESCALQHYRKSQRCYVCDKQTNGVFNPAK |
| VNDDENYEVSSDDEDLPFKCFICRNSFKNPVVTKCKHYFCESCALQHYRKSQRC.VCDKQTNGVFNPAK |
Retrocopy | VNDDENYEVSSDDEDLPFKCFICRNSFKNPVVTKCKHYFCESCALQHYRKSQRCCVCDKQTNGVFNPAK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .69 RPM |
28 .78 RPM |
SRP009831_brain |
0 .66 RPM |
11 .84 RPM |
SRP009831_dewlap |
1 .90 RPM |
83 .28 RPM |
SRP009831_embryo |
0 .30 RPM |
26 .05 RPM |
SRP009831_heart |
0 .52 RPM |
23 .35 RPM |
SRP009831_liver |
0 .08 RPM |
8 .22 RPM |
SRP009831_lung |
0 .20 RPM |
14 .10 RPM |
SRP009831_ovary |
2 .05 RPM |
75 .48 RPM |
SRP009831_skeletal_muscle |
0 .04 RPM |
7 .54 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_207 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_207 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.