>retro_acar_27
ATGAAGGACGTCCCTGGCTACCTGCAGCAGTCTCAGAGCTCGGGGCCAGGCCAGGCCGCCGTGTGCCACCGCCTGGAGGA
GCTCTACAACAAAAAACTCTGGCACCAACTGACTCTCCAGGTTTTGGACTTTGTTCAGGACCCCTGCTTTGCCCAAGGAG
ATGGGCTTATCAAGTTATATGAGAACTTCATCAGTGAATTTGAACACAGGGTGAACCCTTTGTCCCTTGTAGAAATTATT
CTTCATGTAGTACGACAGATGACAGATCCTAATGTGGCCCTTACTTTTCTGGAAAAGACCCGAGAAAAGGTGAAAAGCAG
TGATGAAGCTGTGATTCTTTGTAAAACAGCAATTGGGGCTCTGAAATTAAATATTGGTGACCTGCAAGTCACAAAGGAAA
CCATAGAAGAAGTTGAGGAGATGCTGAATAATCTGCCTGGTGTGACATCTATTCATAGCCGCTTTTATGACCTCTCCAGC
AAGTATTATCAGACAATCGGGAATCATGCCTCTTACTATAAGGATGCTCTAAGGTTTCTGGGATGTATAGATGTCAGAGA
TCTACCAGTGGCAGACCAGCAGGAGAGAGCCTTTACATTGGGCCTGGCAGGACTCCTTGGGGAAGGAGTCTATAACTTTG
GCGAACTGCTTATGCATCCAGTGCTGGAGTCTTTGAGGGACACTGACAGACAGTGGCTGATTGACACTCTTTATGCCTTC
AACAGTGGCAATGTGGAAAAATTCCAGGCTTTGAAGTCAGCATGGGGCCAGCAGCCAGACCTGGCTGCAAATGAAGCTCT
TCTGCTGCAAAAGATCCAGTTGCTTTGCCTCATGGAGATGACCTTCACCCGACCAGCTAACCACTGGCAACTCACTTTTG
AAGAGATTGCTAAAAGTGCCAAAGTCACTGTAAATGAGGTAGAGCTGCTAGTGATGAAAGCGCTTTCAGTAGGTTTGGTA
AAAGGCAGTATTGACGAAGTGGACAAAAAGGTTCACATGACTTGGGTCCAACCACGGGTGCTGGATTTACAACAGATAAA
GGGCATGAAAGTCCGCCTGGAGTTCTGGTGCACAGATGTTAAGAGCATGGAGATGTTGGTGGAGCACCAAGCCCATGATA
TCCTAACATAA
ORF - retro_acar_27 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.94 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MKDVPGYLQQSQSSGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHR |
| MKDVPGYLQQSQSSGPGQAAV.HRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHR |
Retrocopy | MKDVPGYLQQSQSSGPGQAAVCHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHR |
|
Parental | VNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEEVEE |
| VNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEEVEE |
Retrocopy | VNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEEVEE |
|
Parental | MLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCIDVRDLPVADQQERAFTLGLAGLLGEGV |
| MLNNLPGVTS.HSRFYDLSSKYYQTIGNHASYYKDALRFLGCIDVRDLPVADQQERAFTLGLAGLLGEGV |
Retrocopy | MLNNLPGVTSIHSRFYDLSSKYYQTIGNHASYYKDALRFLGCIDVRDLPVADQQERAFTLGLAGLLGEGV |
|
Parental | YNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVEKFQALKSAWGQQPDLAANEALLLQKIQLLCLMEM |
| YNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVEKFQALKSAWGQQPDLAANEALLLQKIQLLCLMEM |
Retrocopy | YNFGELLMHPVLESLRDTDRQWLIDTLYAFNSGNVEKFQALKSAWGQQPDLAANEALLLQKIQLLCLMEM |
|
Parental | TFTRPANHRQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKKVHMTWVQPRVLDLQQIKGMK |
| TFTRPANH.QLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKKVHMTWVQPRVLDLQQIKGMK |
Retrocopy | TFTRPANHWQLTFEEIAKSAKVTVNEVELLVMKALSVGLVKGSIDEVDKKVHMTWVQPRVLDLQQIKGMK |
|
Parental | DRLEFWCTDVKSMEMLVEHQAHDILT |
| .RLEFWCTDVKSMEMLVEHQAHDILT |
Retrocopy | VRLEFWCTDVKSMEMLVEHQAHDILT |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .13 RPM |
26 .16 RPM |
SRP009831_brain |
0 .14 RPM |
37 .49 RPM |
SRP009831_dewlap |
0 .30 RPM |
64 .76 RPM |
SRP009831_embryo |
0 .77 RPM |
98 .67 RPM |
SRP009831_heart |
0 .00 RPM |
40 .88 RPM |
SRP009831_liver |
0 .00 RPM |
27 .32 RPM |
SRP009831_lung |
0 .00 RPM |
28 .06 RPM |
SRP009831_ovary |
0 .12 RPM |
73 .93 RPM |
SRP009831_skeletal_muscle |
0 .04 RPM |
33 .14 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_27 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_27 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.