>retro_acar_32
GGCGCCGAGGAGATCGTGGAAGTGGTGGACCTGGAGCCGCCTGGGCCCGATGATCTGGCTGGTGAGATGGAAGATGTGGA
TCTCGATGAAGAACAGGGCGCTTGGGTGACTGAAGAGGAGGATGAGGGAGTAGAAGAGGGCATGGCGGCCCAAGATGACA
GCGAGGTCACCTTCTCAAAACATACTGCTTCTGTTTTCTGTGTCAGCCTTGATCCCAAGACTAACACGCTGGCAGTGACA
GGTGGTGAAGATGACAAGGCCTTTGTGTGGCGCCTCAGTGATGGAGAACTCCTTTTTGAATGCTCAGGTCATAAAGACTC
TGTCACATGTACTGGGTTTAGCCATGACTCCACCTTTGTGGCTACAGGTGACATGAGCGGATTGATCAAAGTCTTGACCA
AAGAGGAGATCTGGTCTTTTGAAGTGGGTGACTTGGAGTGGATGGAGTGGCACCCTCAATCCCATATCCTTCTGGCTGGA
ACAGCAGATGGAAACTCCTGGATGTGGAAAATCCCCAGTGGGGAATGCAAGACGTTCCAAGGGCCAAACTGCCCTGCTAC
CTGTGGACGTGTCCTTTCCGATGGAAAGAGAGCTGTGGTTGGCTATGAAGATGGAACAGTTCGCATCTGGGATCTGAAGC
AGGGGAGTCCACTACATGTCCTTAAAGGTCAGGATGGTCATCAGGGCCCTTTGACATGTGTGGCCAGCAATAAGGATGGC
AGCCTAATCCTGACAGGTTCTGTTGACTGCCATGCCAAGCTGGTGAACTCTGCAACGGGCAAGGTTGTGTCTGTGTTCAA
GGCAGAGAGCATTGTCCCCAAGCCTTCAGTGGGAGAGACTGAGGAGGCTGAATCCAACTCAGTGGAGTCGCTGGGTTTCT
GCAATGTGATGCCACTGGCAGCTGTTGGCTATTTAGATGGGACCTTGGCCATTTATGACCGTGCTACCCAGACCTTAAGA
CACAAGTGCCAGCATGAGTCAGGGATTGTACAGCTCCTGTGGGAGGACAGCTCACCTGTGGTTTATACCTGCAGCCTAGA
TGGGGCTGTGTCCCTCTGGGATGCCCGTTCAGGAAAGTTGATCAGTGAGTACCGGGGCTACTCAGCAGAAATCCTGGACT
TGGCTTTGTACAAAGATGCTTCCATTGTAGTTACTACTTCCGGCGATCACCAGGCCAAGGTGTTCTGTGTGCAGCGCCCA
GATCGCTAA
ORF - retro_acar_32 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
96.79 % |
Parental protein coverage: |
93.1 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | GAEEIVEVVDLEPPGPDDLAGEMEDVDLDEEQGAWVTEEEDEGVEEGMEAQDDSEVTFSKHTASVFCVSL |
| GAEEIVEVVDLEPPGPDDLAGEMEDVDLDEEQGAWVTEEEDEGVEEGM.AQDDSEVTFSKHTASVFCVSL |
Retrocopy | GAEEIVEVVDLEPPGPDDLAGEMEDVDLDEEQGAWVTEEEDEGVEEGMAAQDDSEVTFSKHTASVFCVSL |
|
Parental | DPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHKDSVTCTGFSHDSTFVATGDMSGLIKVWRVDTKEEI |
| DPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHKDSVTCTGFSHDSTFVATGDMSGLIKV....TKEEI |
Retrocopy | DPKTNTLAVTGGEDDKAFVWRLSDGELLFECSGHKDSVTCTGFSHDSTFVATGDMSGLIKVL---TKEEI |
|
Parental | WSFDVGDLEWMEWHPQSHVLLAGTADGNSWMWKIPSGECKTFQGPNCPATCGRVLSDGKRAVVGYEDGTV |
| WSF.VGDLEWMEWHPQSH.LLAGTADGNSWMWKIPSGECKTFQGPNCPATCGRVLSDGKRAVVGYEDGTV |
Retrocopy | WSFEVGDLEWMEWHPQSHILLAGTADGNSWMWKIPSGECKTFQGPNCPATCGRVLSDGKRAVVGYEDGTV |
|
Parental | RIWDLKQGSPVHVLKGQDGHQGPLTCVASNKDGSLILTGSVDCHAKLVNSATGKVVSVFKAESIVPKPSV |
| RIWDLKQGSP.HVLKGQDGHQGPLTCVASNKDGSLILTGSVDCHAKLVNSATGKVVSVFKAESIVPKPSV |
Retrocopy | RIWDLKQGSPLHVLKGQDGHQGPLTCVASNKDGSLILTGSVDCHAKLVNSATGKVVSVFKAESIVPKPSV |
|
Parental | GETEETESNSVESLGFCNVMPLAAVGYLDGTLAIYDLATQTLRHKCQHESGIVQLLWEDSSPVVYTCSLD |
| GETEE.ESNSVESLGFCNVMPLAAVGYLDGTLAIYD.ATQTLRHKCQHESGIVQLLWEDSSPVVYTCSLD |
Retrocopy | GETEEAESNSVESLGFCNVMPLAAVGYLDGTLAIYDRATQTLRHKCQHESGIVQLLWEDSSPVVYTCSLD |
|
Parental | GAVSLWDARSGKLISEYRGHSAEILDFALNKDASIVVTTSGDHQAKVFCVQRPDR |
| GAVSLWDARSGKLISEYRG.SAEILD.AL.KDASIVVTTSGDHQAKVFCVQRPDR |
Retrocopy | GAVSLWDARSGKLISEYRGYSAEILDLALYKDASIVVTTSGDHQAKVFCVQRPDR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .98 RPM |
16 .61 RPM |
SRP009831_brain |
1 .99 RPM |
15 .72 RPM |
SRP009831_dewlap |
1 .77 RPM |
17 .21 RPM |
SRP009831_embryo |
2 .85 RPM |
30 .88 RPM |
SRP009831_heart |
3 .06 RPM |
25 .84 RPM |
SRP009831_liver |
1 .27 RPM |
12 .64 RPM |
SRP009831_lung |
1 .81 RPM |
14 .81 RPM |
SRP009831_ovary |
2 .01 RPM |
19 .42 RPM |
SRP009831_skeletal_muscle |
2 .26 RPM |
18 .50 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_32 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_32 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.