RetrogeneDB ID: | retro_acar_36 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 1:107626724..107627363(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000014657 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSACAG00000003663 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.82 % |
Parental protein coverage: | 57.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MESASQDINLNSPNKGLLADTMTDVPVDNTSAAA-PPPPLRASAYNGLTEAEEEELRSELAKVEEEIGTL |
MES.SQDINLNSPNKGLLADTMTD..VDNTSAAA.PPPPLRASAYNG.TEAEEEELRSELAKVEEEIGTL | |
Retrocopy | MESTSQDINLNSPNKGLLADTMTDMHVDNTSAAAAPPPPLRASAYNGFTEAEEEELRSELAKVEEEIGTL |
Parental | RQVLAAKERHCGELKRKLGLTPLDGLKQNLSKSWHDVQVSNAYMKTSEKLGEWNEKVTQSDLYVSASSTL |
RQVLAAKERHCGELKRKLGLTPLDGLKQNLSKSW.DVQ.SNAY...S..L..WN.K.TQS..Y.....TL | |
Retrocopy | RQVLAAKERHCGELKRKLGLTPLDGLKQNLSKSWRDVQISNAYVSASSTLEDWNDKLTQSEAYKKTQETL |
Parental | EDWNDK |
.....K | |
Retrocopy | SHVGQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 1 .08 RPM | 157 .28 RPM |
SRP009831_brain | 0 .52 RPM | 138 .61 RPM |
SRP009831_dewlap | 1 .31 RPM | 160 .94 RPM |
SRP009831_embryo | 2 .49 RPM | 218 .43 RPM |
SRP009831_heart | 1 .87 RPM | 258 .48 RPM |
SRP009831_liver | 0 .29 RPM | 113 .14 RPM |
SRP009831_lung | 0 .76 RPM | 246 .63 RPM |
SRP009831_ovary | 1 .35 RPM | 189 .84 RPM |
SRP009831_skeletal_muscle | 0 .29 RPM | 98 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000003663 | 1 retrocopy |
retro_acar_36 ,
|
Dasypus novemcinctus | ENSDNOG00000014930 | 1 retrocopy | |
Equus caballus | ENSECAG00000021789 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013689 | 1 retrocopy |