>retro_acar_64
AAAAACTGGATATGGGGGCAGAAGAGGCAGGGCGCCGTGGAAGCCAGAGCTGAATTGAAAGAGTACCCCCCGGACTGTCC
TCTGGATTGGGAGCAGCTGGAGAGGAGCTCCTGGTCCTTCCTTCATACAATGGCAGCTTACTACCACAACCAGTCCAATA
CAAGCGAGCAGGAGGAAATGGTCCAGTTCATCAACTTATTTCCAAGGTTCTCCCTTGTAACGAATGTGGATTAGATTTTA
GGAAAATGATACAACGGAATCAGCCCAGCGCCTCCAGCAGGCACAATCTGACATAATGGATTTTGCTGGATCCACAATGA
GGTGAACCAGAAACTGGGGAAGCCCGAATTTGACTGTTCCCTCATCGATGAG
ORF - retro_acar_64 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.63 % |
Parental protein coverage: |
74.25 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | RSWMREQKRQGAAEIGAELKENPLNCPLDREELGRNSWSFLHTMAAYYPDRPNKTEQQEMIQFINLF-SK |
| ..W...QKRQGA.E..AELKE.P..CPLD.E.L.R.SWSFLHTMAAYY....N..EQ.EM.QFINLF.SK |
Retrocopy | KNWIWGQKRQGAVEARAELKEYPPDCPLDWEQLERSSWSFLHTMAAYYHNQSNTSEQEEMVQFINLF<SK |
|
Parental | VFPCEECREDFRKRIQQNQPDASSQRNLTQW-FCRIHNEVNQKLGKPEFDCSLVDE |
| V.PC.EC..DFRK.IQ.NQP.ASS..NLT.W.FC.IHNEVNQKLGKPEFDCSL.DE |
Retrocopy | VLPCNECGLDFRKMIQRNQPSASSRHNLT*W>FCWIHNEVNQKLGKPEFDCSLIDE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .00 RPM |
11 .78 RPM |
SRP009831_brain |
0 .00 RPM |
10 .32 RPM |
SRP009831_dewlap |
0 .00 RPM |
42 .78 RPM |
SRP009831_embryo |
0 .00 RPM |
25 .22 RPM |
SRP009831_heart |
0 .00 RPM |
13 .18 RPM |
SRP009831_liver |
0 .00 RPM |
15 .67 RPM |
SRP009831_lung |
0 .00 RPM |
22 .67 RPM |
SRP009831_ovary |
0 .00 RPM |
42 .62 RPM |
SRP009831_skeletal_muscle |
0 .00 RPM |
25 .31 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_64 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_64 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.