>retro_acar_72
ATGTTGTTGGGCATGGAGGCCAAGGGCAGCGGCGGGTCTCGCGCCTGCAGGAAGCTCATTGCGGCCGAAGAGGCCGAGTT
GTTCGAGCTCGCGCAGGCAGCAGGGAGCGCGCTTGACCTGGAAGTGTTCAAGATCCTGCTGGGTCTGGTGCTCATGAATG
TGGCCCCTGTGGCCACCTTCCAGATGCTGTGTGCTATGTGTGCTGCCAGGTAGAGAGAAAGTGGCCCTGAGGCCAATGCC
ACCAAGCCCCCGCAAGGTAGACCCAGAACTATATCTGCAACATCTGGGAACCAGACGCTGTCAGACCATAGTAGCCGGGA
AGGATCTATTCAACAAGTACCTTGGCAACCAAGTGCCAGCAGGTTACAGAAGGCTGGATGCTCTGGGAAAAGTGCA
ORF - retro_acar_72 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.82 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSSGMEAKGSGGSRARRKLLTAEEAELFELAQAAGTGLDPEVFKILLDLLRMNVAPVAIYQVLRAMCAAG |
| M..GMEAKGSGGSRA.RKL..AEEAELFELAQAAG..LD.EVFKILL.L..MNVAPVA..Q.L.AMCAA. |
Retrocopy | MLLGMEAKGSGGSRACRKLIAAEEAELFELAQAAGSALDLEVFKILLGLVLMNVAPVATFQMLCAMCAAR |
|
Parental | QRVSGPEANATEPPRGRPRTISATSGNQTLSDQSSREGSIQRVPRQPSASRLQKAGCPGKSA |
| .R.SGPEANAT.PP.GRPRTISATSGNQTLSD.SSREGSIQ.VP.QPSASRLQKAGC.GKSA |
Retrocopy | *RESGPEANATKPPQGRPRTISATSGNQTLSDHSSREGSIQQVPWQPSASRLQKAGCSGKSA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .62 RPM |
9 .85 RPM |
SRP009831_brain |
0 .33 RPM |
19 .84 RPM |
SRP009831_dewlap |
0 .00 RPM |
8 .77 RPM |
SRP009831_embryo |
0 .33 RPM |
26 .82 RPM |
SRP009831_heart |
0 .16 RPM |
11 .00 RPM |
SRP009831_liver |
0 .25 RPM |
13 .46 RPM |
SRP009831_lung |
0 .65 RPM |
4 .99 RPM |
SRP009831_ovary |
0 .04 RPM |
14 .83 RPM |
SRP009831_skeletal_muscle |
0 .18 RPM |
11 .62 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_72 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_72 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.