>retro_acar_77
ATTGTATTGTTGGTGCATAGATGTTGTGTCTGTGGGGATGATTTAGGTTTCAATTTTTATTTTTTATATATATACATATA
TTTTCTTTTTTTCTGTTTTTGTTTTGTTCTCTCTTTCTTTCAATTTAGTTTATTTATCTCTTCCTCAGACATACACCCAA
ATACACACACACACACATTTGTACATGTAATCCATGTTATTGTTCATTACTTGTTTTTTTGCACAATGGTATGTCTGTAT
GTTCTTCACTTATGTTACATG
ORF - retro_acar_77 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
51.69 % |
Parental protein coverage: |
98.86 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | IVLLVHRCCVCGDDLGFNLYFIYINF-ILFSVIIVFYCINLLVFFIFYWVARRPSWRSVR-YFFLFLFFV |
| IVLLVHRCCVCGDDLGFN.YF.YI...I.......F....L...FI.......P...............V |
Retrocopy | IVLLVHRCCVCGDDLGFNFYFLYIYI<IFSFFLFLFCSLFLSI*FIYLFLRHTPKYTHTH>FVHVIHVIV |
|
Parental | FCLFFCTMVCLYVLHLCYM |
| ..LFFCTMVCLYVLHLCYM |
Retrocopy | HYLFFCTMVCLYVLHLCYM |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .13 RPM |
0 .00 RPM |
SRP009831_brain |
0 .05 RPM |
0 .00 RPM |
SRP009831_dewlap |
0 .00 RPM |
0 .00 RPM |
SRP009831_embryo |
0 .03 RPM |
0 .03 RPM |
SRP009831_heart |
0 .00 RPM |
0 .00 RPM |
SRP009831_liver |
0 .04 RPM |
0 .04 RPM |
SRP009831_lung |
0 .10 RPM |
0 .05 RPM |
SRP009831_ovary |
0 .00 RPM |
0 .00 RPM |
SRP009831_skeletal_muscle |
0 .00 RPM |
0 .00 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_77 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_77 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.