RetrogeneDB ID:

retro_acar_78

Retrocopy
location
Organism:Anole lizard (Anolis carolinensis)
Coordinates:2:23544119..23544368(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSACAG00000023849
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_acar_78
GAAGATCAGGAGGAGGAGGAGGAAGCCACACTTAAAAATCCAAAGAGCTGTGTGGAAGAACAGAAGTAGCTGAAGCAGAG
CTTCCAGAGGTTTGATGCAGACAAAGACGAAGATGAAAATAGCTACTCATCATCTTTACTATGCAAATGAGCCAAATGTA
AGGAAGAGAAGGAGCACGAGGAGGCTGACTACATCCACTGGCTGAACAGCCAGGTGAAGCCAGGTGCAGAAGAGGACTTT
CAAGACCTG

ORF - retro_acar_78 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 68.24 %
Parental protein coverage: 61.15 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEEEEEKEEAAIKNPKSYVEEQKQLKQSFQRFVADSDEEEEENDNLSSLLRKRAKSKEEKEHEEADYIRWL
E..EE.EEA..KNPKS.VEEQK.LKQSFQRF..D.D..E.EN...SSLL.K.AK.KEEKEHEEADYI.WL
RetrocopyEDQEEEEEATLKNPKSCVEEQK*LKQSFQRF--DADKDEDENSYSSSLLCK*AKCKEEKEHEEADYIHWL
ParentalKGQANSGAEEALQDL
..Q...GAEE..QDL
RetrocopyNSQVKPGAEEDFQDL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP009831_adrenal 0 .00 RPM 1 .18 RPM
SRP009831_brain 0 .00 RPM 1 .89 RPM
SRP009831_dewlap 0 .00 RPM 2 .53 RPM
SRP009831_embryo 0 .00 RPM 1 .07 RPM
SRP009831_heart 0 .00 RPM 2 .54 RPM
SRP009831_liver 0 .00 RPM 0 .57 RPM
SRP009831_lung 0 .00 RPM 1 .21 RPM
SRP009831_ovary 0 .00 RPM 3 .40 RPM
SRP009831_skeletal_muscle 0 .00 RPM 0 .15 RPM
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_78 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_78 was not experimentally validated.

Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG00000023849 1 retrocopy
retro_acar_78 ,



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