RetrogeneDB ID: | retro_acar_91 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 2:72451503..72452361(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARG2 | ||
Ensembl ID: | ENSACAG00000005722 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 97.2 % |
Parental protein coverage: | 80.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSLRSSFGRLLKQRAGSTLRVQKRPAHSVALIGAPFSRGQKKSGVDHGPAAIRDAGLVGKLSRMGCQVYD |
MSLRSSFGRLLKQRAGS.LRVQKRPAHSVALIGAPFSRGQKKSGVDHGPAAI.DAGLVGKLSRMGCQVYD | |
Retrocopy | MSLRSSFGRLLKQRAGSKLRVQKRPAHSVALIGAPFSRGQKKSGVDHGPAAIMDAGLVGKLSRMGCQVYD |
Parental | LGDLNFTQIPNDELYNNLVKYPRSVGSASQVLADTVNGAVAAGHSCVTIGGDHSLALGSISGHTRQYPHL |
LGDLNFTQ.PNDE.YNNLVKYPRSVGSASQVLADTVNGAVAAGHSCVTIGGDHSLALG.ISGHTRQYPHL | |
Retrocopy | LGDLNFTQAPNDEVYNNLVKYPRSVGSASQVLADTVNGAVAAGHSCVTIGGDHSLALGFISGHTRQYPHL |
Parental | CVIWVDAHADINTPLTTNSGNLHGQPVSFLLRELQDKVPQLPGFSWLKPCLSRSDIVYIGLRDVDPAEHY |
CVIWVDAHADINTPLTTNSGNLHGQPVSFLLRELQDKVPQLPGFSWLKPCLSRSDIVYIGLRDVDPAEHY | |
Retrocopy | CVIWVDAHADINTPLTTNSGNLHGQPVSFLLRELQDKVPQLPGFSWLKPCLSRSDIVYIGLRDVDPAEHY |
Parental | ILKNYGIQYFSMRDIDRLGIQKVMERTFDHLLSRGQRPIHLSFDIDAFDPTLAPSTGTPVLGGLTYREGM |
ILKNYGIQYFSMRDIDRLGIQKVMERTFD.LLSRGQRPIHLSF.IDAFDPTLAPSTGTPVLGGLTY.EGM | |
Retrocopy | ILKNYGIQYFSMRDIDRLGIQKVMERTFDYLLSRGQRPIHLSFNIDAFDPTLAPSTGTPVLGGLTYCEGM |
Parental | YISEEI |
YISEEI | |
Retrocopy | YISEEI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 9 .19 RPM |
SRP009831_brain | 0 .09 RPM | 29 .30 RPM |
SRP009831_dewlap | 0 .25 RPM | 91 .46 RPM |
SRP009831_embryo | 0 .30 RPM | 68 .02 RPM |
SRP009831_heart | 0 .00 RPM | 10 .17 RPM |
SRP009831_liver | 0 .12 RPM | 20 .16 RPM |
SRP009831_lung | 0 .00 RPM | 8 .71 RPM |
SRP009831_ovary | 0 .39 RPM | 108 .14 RPM |
SRP009831_skeletal_muscle | 0 .04 RPM | 7 .36 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000005722 | 1 retrocopy |
retro_acar_91 ,
|
Choloepus hoffmanni | ENSCHOG00000007159 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000015277 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000004808 | 1 retrocopy | |
Homo sapiens | ENSG00000081181 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005615 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010837 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000009978 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000741 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000584 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005926 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006467 | 1 retrocopy |