>retro_acar_94
ATTGGCTCCTTCGACCTCAAGTTCTTTTGCGAGCTGAGACCCGGTCTCCTGGGATGGGCGGTGATCAACATGGGAATGCT
GATGAAGGAGGCGGAGGTCCGCGGCAGCCCCTCGCTGGCCATGGTCCTGGTCAACGGCTTCCAGCTGCTCTACGTGGTGG
ACGCTTTGTGGCACGAGGAGGCGGTCTTGACCACCATGGACATCCAGCGGGACGGCTTTGGCTTCATGCTGGCCTTTGGG
GACCTGGCCTGGGTGCCCTTCCTCTACAGCCTCCAGGGTCACTTCTTGGTCACTCACCCCCACAGGGTCAGCCTCCCTGC
GGCCGCCGGCATCATCCTCCTGAACGGCCTGGGCTACTCCATCTTCCGGGGCGCCAACTCCCAGAAGAACACTTTCCGAC
GCAACCCCAACGACCCCCGAGTGGCCGGGCTTCGCACGCTGCCCACGGCCACGGGGCGACGGCTGCTGGTGAGCGGGTGG
TGGGGCCTGGTGCGGCACCCCAACTACCTGGGGGACCTCCTCATGGCCTTGGCCTGGTCACTCACCTGCGGTCTGACCCA
CGCGCTGCCCTACTTCTACCCGGCCTACTTCCTGCTGCTGCTGCTGCACCGGGAGGCACGGGACGAGCGCCACTGCCTGC
GCCAGTACGGCCTGGCCTGGGGGGAGTATTGCCGGAAGGTCCCCTTCCGCATCCTGCCCTACGTTTAC
ORF - retro_acar_94 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
99.15 % |
Parental protein coverage: |
59. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | IGSFDLKFFCELRPGLLGWAVINMGMLMKEAEVRGSPSLAMVLVNGFQLLYVVDALWHEEAVLTTMDIQR |
| IGSFDLKFFCELRPGLLGWAVINMGMLMKEAEVRGSPSLAMVLVNGFQLLYVVDALWHEEAVLTTMDIQR |
Retrocopy | IGSFDLKFFCELRPGLLGWAVINMGMLMKEAEVRGSPSLAMVLVNGFQLLYVVDALWHEEAVLTTMDIQR |
|
Parental | DGFGFMLAFGDLAWVPFLYSLQGHFLVTHPHRVSLPAAAGIILLNGLGYSIFRGANSQKNTFRRNPNDPR |
| DGFGFMLAFGDLAWVPFLYSLQGHFLVTHPHRVSLPAAAGIILLNGLGYSIFRGANSQKNTFRRNPNDPR |
Retrocopy | DGFGFMLAFGDLAWVPFLYSLQGHFLVTHPHRVSLPAAAGIILLNGLGYSIFRGANSQKNTFRRNPNDPR |
|
Parental | VAGLRTLPTATGRRLLVSGWWGLVRHPNYLGDLLMALAWSLPCGLTHALPYFYPAYFLLLLLHREARDER |
| VAGLRTLPTATGRRLLVSGWWGLVRHPNYLGDLLMALAWSL.CGLTHALPYFYPAYFLLLLLHREARDER |
Retrocopy | VAGLRTLPTATGRRLLVSGWWGLVRHPNYLGDLLMALAWSLTCGLTHALPYFYPAYFLLLLLHREARDER |
|
Parental | HCLGQYGLAWGEYCRKVPFRILPYVY |
| HCL.QYGLAWGEYCRKVPFRILPYVY |
Retrocopy | HCLRQYGLAWGEYCRKVPFRILPYVY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .07 RPM |
1 .44 RPM |
SRP009831_brain |
1 .70 RPM |
18 .60 RPM |
SRP009831_dewlap |
0 .04 RPM |
3 .37 RPM |
SRP009831_embryo |
0 .62 RPM |
5 .01 RPM |
SRP009831_heart |
0 .05 RPM |
1 .40 RPM |
SRP009831_liver |
0 .12 RPM |
0 .65 RPM |
SRP009831_lung |
1 .16 RPM |
6 .60 RPM |
SRP009831_ovary |
0 .15 RPM |
2 .28 RPM |
SRP009831_skeletal_muscle |
0 .04 RPM |
0 .87 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_94 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_94 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.