RetrogeneDB ID: retro_alyr_6

Retrocopy location

• Organism: Lyre-leaved rock-cress (Arabidopsis lyrata)
• Coordinates: 4:20625446..20631953(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: fgenesh2_kg.4__2378__AT2G42270.1
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: fgenesh2_kg.1__2288__AT1G20960.1
• Aliases: None
• Description: None

Sequence

>retro_alyr_6
ATGTCGAATTTGGGTGGCGGTGGTGCGGAGGAGCAAGCTAGGTTGAAGCAGTATGGGTACAAAGTCAATTCCAGTCTGGT
TCTTAACAGTGATGAGCGTCGTCGTGATACTCATGAATCATCTGGTGAACCGGAGAGTCTCAGGGGCAGAATTGATCCGA
AATCCTTTGGAGATCGTGTTGTTAAGGGGAGGCCTCATGAGTTAGATGAGAGGCTGAAACAATCGAAGAAGAAGGAGCGT
GAAGATGATATGGTATCTACTCAGGAGAGTAAAAGACCTCGTCTCAGGGAGGTGATTGTGCTTACTGATACGGATGATGG
TGTTTATCAGCCCAAGAGTAAGGAAACAAGGGCTGCTTTTGAGACTATGCTTAGTCTTATTCAGCAGCAATTGGGTGGGC
AGCCTTTGAATATTGTTTGTGGTGCGGCTGATGAGATTTTGGCTGTTCTCAAGAACGAATCCGTCAAAAACCATGAAAAG
AAGGTAGAGATTGAGAAACTATTAAATATTATTCCTGATAAGGTTTTCAATCAGTTTGTTACCATTGGAAAACTGATTAC
AGACTATCAAGAGGAGGGTGGTGATTCTTTAAGTGGTCAAGCTTGTGAGGATGAAGGACTTGATTATGATGTTGGTGTGG
CACTTGAATTTGAAGAGGATGATGAGGAGAGTGATCTTGATATGGTCCACGATGAAAAGGATGAGGACGATGAAGACGAT
GTTGAGCCTAACAAAACCAGAGGTGTCCAGGTGGGTATGACAATAAACGGTGAGGATGCAAGACATGCAAAAGAGGATAT
GAGTCTTAATGTTCAGGATATTGATGCTTATTGGCTTCAGAGAAAGATATCTCAAGAATATGAGCAGAAGATTGATGCAC
AAGAGTGCCAGGAACTCGCAGAAGAGCTGCTTAAGATACTTGCTGAGGGTAGTGATAGGGATGCTGAGATCAAGCTGCTT
GAGCACCTTCAGTTTGAAAAGTTCAGCCTTGTTAAATTTCTGTTGCAAAACCGCCTTAAAGTTGTGTGGTGCACCCGTTT
GGCTAGGGCAAGAGACCAAGAAGAGAGGAATCAAATTGAGGAGGAGATGACGGGGTCGGGCTCAGAGTTGGCAGCAATTG
TGAAGGAGTTACATGCCAAAAGAGCAACCGCCAAAGAAAGGGAAGAGAAACGGGAGAAAGATATCAAAGATGAAGCCCGA
CATCTTATGGATGATGACTCTGATGGAGACAGAGAAAGAGGCCTGAGAGATGTTGATGATATAGATTTGGAGAATGGTTG
GCTGAAGGGTCAGCGTCAGGTGCTGGACCTGGAGAGCCTTGCTTTTTATCAAGGTGGTTTCACGAGGGAGAATAACAAGT
GTGAGCTTCCCGATCGCTCTTTCAGAATATGTGGCAAGGAATTTGATGAGGTTCATGTACCGTGGGTTTCGAAAAAGTTT
GATAGTAATGAAAAGCTTGTAAAAATTAGCGATTTGCCAGAGTGGGCCCAACCAGCTTTTGGGGGAATGCAACAGTTGAA
CAGGGTTCAGAGCAAAGTGTACAGCACTGCTCTTTTTAAGGCCGAGAACATTCTTCTTTGTGCTCCAACTGGTGCGGGGA
AGACCAATGTTGCTGTGCTCACCATACTGCACCAGCTTGGATTGAATATGAACCCAGATGGAACGTTTAATCATGGGAAT
TACAAAATTGTCTATGTTGCACCAATGAAAGCCCTTGTTGCTGAGGTCGTGGATAGTCTATCTCAACGGTTGAAGGATTA
TGGAGTTACTGTGAAGGAACTCAGTGGGGATCAGTCCCTTACTGGGCAAGAAATCAAAGAGACTCAGATAATTGTTACAA
CGCCAGAGAAGTGGGATATCATCACCAGGAAATCTGGAGATCGCACTTATACTCAGCTTGTGAGGCTCCTTATAATCGAC
GAAATTCATCTTCTTCATGATAATCGAGGGCCTGTGCTTGAAAGTATTGTCGCTAGGACTCTTAGGCAGATTGAAACCAC
AAAGGAGCATATTCGTCTGGTAGGTTTATCTGCAACACTGCCAAACTGTGACGATGTAGCTTTATTTTTGCGGGTGGATC
TTAAAAATGGGTTGTTTAAATTTGACCGCAGCTACAGACCTGTGCCTCTCAGTCAGCAATATATAGGAGTTAATGTGAAA
AAGCCGTTGCGGAGGTTCCAATTGATGAACGATATATGTTATCAGAAAGTAGTGGCTGTTGCTGGAAAACACCAGGTCCT
TATCTTTGTCCATTCGAGGAAGGAAACAGCAAAAACTGCAAGGGCGATACGGGACACCGCTATGGCAAATAATACCCTCA
GCAGATTCTTGAAGGAAGATAGTCAAAGTCGTGAAATTCTTCAGAGTTTGACTGAACTTCTCAAGAATAGTGACCTGAAA
GAGCTTCTGCCTTATGGTTTTGCAATTCATCATGCCGGGTTGACAAGGACTGATCGTGAGATAGTTGAGAATCAATTTCG
CTTGGGGAATTTGCAAGTGTTGATTTCCACGGCAACTCTTGCCTGGGGTGTGAATTTGCCCGCACATACTGTCATTATCA
AAGGAACCCAAGTATATAATCCTGAGAGAGGGGCGTGGATGGAGCTGAGTCCTTTAGATGTTATGCAGATGATTGGTCGT
GCCGGAAGACCTCAGTATGACCAACAGGGAGAGGGGATAATAATCACTGGATACAGCGAGCTACAGTATTATCTTCGTTT
GATGAATGAGCAACTGCCTATTGAAAGCCAGTTTATTTCCAAACTTGCTGATCAGCTCAATGCTGAAATTGTGCTTGGAA
CCATTCAGAATGCTAGAGAAGCTTGCCGCTGGCTTGGCTATACATATTTATATGTCTGCATGGTTCGGAATCCGACACTG
TATGGCGTACCGCCTGATGCCCTTGCAAAAGACTTGCTATTAGAGGAGAGAAGAGCTGATCTGATACATTCTGCTGCTAC
TATCTTGGACAAGAACAACCTGATTAAGTACGATAGGAAAAGTGGACACTTCCAGGTTACCGATTTGGGACGCATTGCTA
GCTACTACTACATAACCCATGGGACAATAGCTGCATACAATGAGAATCTGAAGCCAACAATGAATGATATAGAGCTTTGC
CGTCTGTTCTCACTGAGTGAGGAGTTCAAGTATGTCACTGTTCGACAAGATGAGAAGATGGAACTGGCAAAGCTTTTGGA
TCGTGTACCGATTCCGGTAAAGGAAACACTAGAAGATCCTAGTGCAAAGATCAACGTTTTGCTGCAAGTATATATTTCAA
AGCTAAAGCTCGAGGGTCTTTCTTTGACATCTGACATGGTTTATATTACCCAGAGTGCTGGACGTCTGCTACGAGCTATT
TTTGAGATTGTGTTGAAGAGGGGGTGGGCTCAACTGTCTGAGAAAGCTCTCAACTTGTCTAAAATGGTAGGGAAGAGGAT
GTGGAGTGTTCAGACACCCCTCTGGCAGTTTCCTGGAATTCCCAAGGAGATTCTGATGAAGGTGGAGAAGAATAATCTGG
TGTGGGAGAGGTACTATGATCTATCTTCACAGGAGCTAGGAGAGCTTATTCGTAATCCTAAGATGGGCAGACCACTTCAC
AAGCACATCCATCAGTTCCCAAAACTGAATCTTGCAGCACATGTTTTGCCGATTTCTCGTTCTGTTCTGCAGGTGAAGCT
TACAGTGACACCTGATTTCCACTGGGATGACAAAGCACATAAATATGTTGAACCGTTTTGGATAATTGTGGAAGACAATG
ATGGTGAAAAGATCCTTCATCATGAGTACTTTCTTTTGAAAAAGCATTATATTGATGAGGACCACACGTTGAACTTCACT
GTGCCAATCTCTGAGCCAATTCCCCCACAGTATTTCATTCGAGTGGTTTCAGACAAATGGCTTGACTCGCCGACTGTGTT
ACCTGTATCTTTCAGGCATCTTATTCTTCCAGAAAAATATCCACCACCTACAGAGCTACTGGATTTGCAGCCCCTCCCGG
TGATGGCCCTAAGGAATCCGTCTTATGAAACTCTGTATCAGGATTTCAAGCATTTCAATCCAGTGCAGACTCAGGTCTTT
AGTGTTTTGTATAACACAAGTGACAATGTATTGGTTGCTGCTCCCACAGGAAGTGGGAAGACTATATGTGCGGAGTTTGC
TATATTAAGGAATCATCTTGAAGGACCTGATTCTACTATGCGTGTTGTCTATGTAGCACCTCTTGAGGCTATTGCCAAGG
AGCAGTTTCGTGATTGGGAGAAAAAGTTTGGAAAGGGGCTTGGTTTACGGGTTGTTGAGTTAACTGGGGAAACAGCATTG
GATCTTAAGCTGCTTGAGAAAGGTCAGATAATCATAAGTACTCCTGAGAAATGGGACGCTCTATCCCGCAGGTGGAAACA
GAGAAAATATATCCAGCAGGTTAGTTTGTTTATTGTTGATGAGCTTCATTTAATTGGGGGTCAAGGTGGTCCAGTATTGG
AGGTAATTGTCTCTAGAATGAGATATATTTCAAGTCAGGTCGGGAATAAAATCAGGATTGTTGCATTATCGACTTCCCTT
GCAAATGCCAAAGATCTTGGGGAGTGGATTGGGGCCAGTTCATGTGGCTTTTTCAACTTCCCGCCTAATGTTCGTCCTGT
CCCACTGGAAATCCACATTCATGGGGTGGACATATTGAGTTTTGAAGCCAGGATGCAGGCGATGACTAAGCCAACATACA
CTGCCATAGTCCAGCATGCCAGGAACAAGAAACCAGCTATCGTTTTTGTCCCGACCCGTAAACATGTCCACCTTACTGAT
GTGGATCTGATAGCATACTCACACATGGACAACATGCAGAACCCTCATTTCCTTTTAGGGAATCTGGAAGAATTAGAGCC
TTTTGTTAAACAAATCTGTGAGGAAACTCTGAAGGAAACTTTACGTCATGGTGTTGGCTACTTGCATGAGGGTTTAAGCA
ATCTGGATCAGGAGATTGTGACTCAGCTTTTTGAAGCTGGACGGATTCAGGTATGTGTAATGTCTAGTTCATTGTGTTGG
GGCACTCCATTGAAGGCGCATTTGGTTGTTGTAATGGGAACACAATTCTATGACGGACGGGAAAATTCTCATTTGGATTA
CCCGATATCTGATCTGCTCCAGATGATGGGTCGTGGTAGCAGACCTCTGCTTGACAACGCTGGGAAGTGTGTGATCTTCT
GTCACGCACCACGTAAAGAGTATTACAAGAAATTTCTGTATGAAGCCTTTCCGGTTGAGAGTCATCTCCAACATTTCTTG
CATGATAATTTCAATTCAGAAGTGGTTGCTAGAGTTATAGAGAACAAGCAAGATGCTGTTGATTATCTTACCTGGAGCTT
CATGTACAGGAGGCTTCCCCAAAACCCTAACTACTACAATCTCCTGGGAGTGAGCCACAGACATTTATCTGATCACCTCT
CAGAGCTAGTTGAAAACACTTTGTCTGATCTTGAAGTGAGTAAATGCATTGAAATAGAGAATGAGTTGGATCTCTCTCCT
CTCAATCTTGGTATGATTGCTTCGTATTATTACATAAATTACACCACCATTGAGCGATTCAGTTCTCTCTTGGCTTCCAA
GACCAAGATGAAGGGTCTTCTTGAGATCTTGACTTCAGCTTCGGAGTATGACTTGATTCCTATACGTCCTGGTGAAGAAG
ACGCAGTTTGGAGACTCATCAATCACCAGAGGTTCTCTTTTGAAAACCCAAAATGCGCAGACCCTCGTGTGAAAACAAAC
GCGCTTCTTCAGGCGCATTTCTCAAGGCAAAAAATCAGCGGTAACCTGGCAATGGATCAGCGTGAGGTCCTCTTATCTGC
AACAAGACTTCTTCAAGCAATGGTCGATGTGATATCGAGCAATGGCACTCTAGATCTTGCTATTTTAGCTATGGAAGTAA
GCCAGATGGTGACTCAAGGCATGTGGGATCGAGACTCCATGCTTCTGCAGCTTCCTCACTTCACAAAGGACTTAGCGAAA
AGGTGGCAAGAGAATCCGGGGAATAACATCGAAACCATATTTGATCTTGTGGAAATGGAAGAGGACAAACGCCAAGAGCT
TCTCCAAATGTCAGACGCTCAGCTTCTTGACATTGCCAGATTCTGCAACCGCTTCCCCAACATTGACCTTACATATGAGA
TTGTGGGCAGCAACGAGGTAAGCCCTGGAAAAGATATCACATTGCAGGTAATACTGGAGAGAGACATGGAGGGAAGGACA
AAGGTGGGACCTGTGGACGCACCAAGATATCCCAAGACTAAAGAAGAAGGTTGGTGGCTAGTCGTTGGAGAAACCAAGAC
GAACCAGTTGATGGCCATCAAGAGAATCTCTCTGCAACGGAAGGCGAAGGTGAAGCTGGGGTCTGAACCAGGAGAGAAGT
CGTATACACTCTACTTCATGTGCGATTCTTACTTGGGTTGTGACCAGGAGTACTCTTTCACTGTTGATGTCAAAGATTCT
GATGCCGCAGATCACATGGAAGAATGA

Alignment

ORF - retro_alyr_6 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.83 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MANLGGG-AEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKGRPQELED
          M.NLGGG.AE..AR.KQY.Y..NSSLVL..D.R.RDTHE..GEPE.L.G.IDP.SFGDRV.KGRP.EL..
Retrocopy MSNLGGGGAEEQARLKQYGYKVNSSLVLNSDERRRDTHESSGEPESLRGRIDPKSFGDRVVKGRPHELDE

Parental  KLKKSKKKERDVVDDTANVRQSKRRRLREESVLTDTDDAVYQPKTKETRAAYEAMLSLIQQQLGGQPLSI
          .LK.SKKKER...DD......SKR.RLRE..VLTDTDD.VYQPK.KETRAA.E.MLSLIQQQLGGQPL.I
Retrocopy RLKQSKKKERE--DDMVSTQESKRPRLREVIVLTDTDDGVYQPKSKETRAAFETMLSLIQQQLGGQPLNI

Parental  VSGAADEILAVLKNDTFRNPEKKMEIEKLLNHIENHEFDQLVSIGKLITDFQE-GGDSGGGKADEEEGLD
          V.GAADEILAVLKN....N.EKK.EIEKLLN.I....F.Q.V.IGKLITD.QE.GGDS..G.A.E.EGLD
Retrocopy VCGAADEILAVLKNESVKNHEKKVEIEKLLNIIPDKVFNQFVTIGKLITDYQEEGGDSLSGQACEDEGLD

Parental  DDLGVAVEFEENEEDDDESDPDMV---QEEDDEEDEEPTRTGGMQVDAGINDQDAGDANEGANLNVQDID
          .D.GVA.EF...EEDD.ESD.DMV.....EDDE.D.EP..T.G.QV...IN..DA..A.E...LNVQDID
Retrocopy YDVGVALEF---EEDDEESDLDMVHDEKDEDDEDDVEPNKTRGVQVGMTINGEDARHAKEDMSLNVQDID

Parental  AYWLQRKISQAYEQQIDPQQCQVLAEELLKVLAEGDDRVVENKLLMHLQFEKFSLVKFLLRNRLKVVWCT
          AYWLQRKISQ.YEQ.ID.Q.CQ.LAEELLK.LAEG.DR..E.KLL.HLQFEKFSLVKFLL.NRLKVVWCT
Retrocopy AYWLQRKISQEYEQKIDAQECQELAEELLKILAEGSDRDAEIKLLEHLQFEKFSLVKFLLQNRLKVVWCT

Parental  RLARAEDQEERKRIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDE-TGGDGGRRR
          RLARA.DQEER..IEEEM.G.G.EL.AIV..LHA.RATAKEREE...K.I..EAR.L.D....GD..R..
Retrocopy RLARARDQEERNQIEEEMTGSGSELAAIVKELHAKRATAKEREEKREKDIKDEARHLMDDDSDGDRERGL

Parental  RDVADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVSKKVDSNEK
          RDV.D.D.E.GW.KGQRQ.LDLESLAF.QGG....N.KC.LP..S.R..GK..DEVHVPWVSKK.DSNEK
Retrocopy RDVDDIDLENGWLKGQRQVLDLESLAFYQGGFTRENNKCELPDRSFRICGKEFDEVHVPWVSKKFDSNEK

Parental  LVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENLLLCAPTGAGKTNVAMLTILQQLEMNRNKDGT
          LVKI...P.WAQPAF.GMQQLNRVQSKVY.TALFKAEN.LLCAPTGAGKTNVA.LTIL.QL..N.N.DGT
Retrocopy LVKISDLPEWAQPAFGGMQQLNRVQSKVYSTALFKAENILLCAPTGAGKTNVAVLTILHQLGLNMNPDGT

Parental  YNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVTVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKS
          .NHG.YKIVYVAPMKALVAEVV..LS.RLKDYGVTV.ELSGDQSLTG.EI.ETQIIVTTPEKWDIITRKS
Retrocopy FNHGNYKIVYVAPMKALVAEVVDSLSQRLKDYGVTVKELSGDQSLTGQEIKETQIIVTTPEKWDIITRKS

Parental  GDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLK
          GDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKE.IRLVGLSATLPN..DVALFLRVDLK
Retrocopy GDRTYTQLVRLLIIDEIHLLHDNRGPVLESIVARTLRQIETTKEHIRLVGLSATLPNCDDVALFLRVDLK

Parental  KGLFKFDRSYRPVPLHQQYIGISVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETAKTAKAIRD
          .GLFKFDRSYRPVPL.QQYIG..VKKPL.RFQLMND.CYQKV.A.AGKHQVLIFVHSRKETAKTA.AIRD
Retrocopy NGLFKFDRSYRPVPLSQQYIGVNVKKPLRRFQLMNDICYQKVVAVAGKHQVLIFVHSRKETAKTARAIRD

Parental  TAMANDTLSRFLKEDSVTREVLQSHVDIVKNGELKNILPYGFAIHHAGLTRGDREIVENLFAQGHVQVLV
          TAMAN.TLSRFLKEDS..RE.LQS.....KN..LK..LPYGFAIHHAGLTR.DREIVEN.F..G..QVL.
Retrocopy TAMANNTLSRFLKEDSQSREILQSLTELLKNSDLKELLPYGFAIHHAGLTRTDREIVENQFRLGNLQVLI

Parental  STATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDRHGEGIIITGYSELQYYL
          STATLAWGVNLPAHTVIIKGTQVYNPE.GAWMELSPLDVMQM.GRAGRPQYD..GEGIIITGYSELQYYL
Retrocopy STATLAWGVNLPAHTVIIKGTQVYNPERGAWMELSPLDVMQMIGRAGRPQYDQQGEGIIITGYSELQYYL

Parental  SLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRNPTLYGLAPDALAKDVVLE
          .LMNEQLPIESQFISKLADQLNAEIVLGT.QNAREAC.WLGYTYLY..MVRNPTLYG..PDALAKD..LE
Retrocopy RLMNEQLPIESQFISKLADQLNAEIVLGTIQNAREACRWLGYTYLYVCMVRNPTLYGVPPDALAKDLLLE

Parental  ERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTIATYNEHLKPTMGDIDLYRLFSL
          ERRADLIHSAATILDKNNL.KYDRKSG.FQVTDLGRIASYYYITHGTIA.YNE.LKPTM.DI.L.RLFSL
Retrocopy ERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYYYITHGTIAAYNENLKPTMNDIELCRLFSL

Parental  SEEFKYVTVRQDEKMELAKLLDRVPIPIKETLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGR
          SEEFKYVTVRQDEKMELAKLLDRVPIP.KETLE.PSAKINVLLQ.YIS.LKLEGLSLTSDMVYITQSAGR
Retrocopy SEEFKYVTVRQDEKMELAKLLDRVPIPVKETLEDPSAKINVLLQVYISKLKLEGLSLTSDMVYITQSAGR

Parental  LVRALYEIVLKRGWAQLAEKALNLSKMVGRRMWSVQTPLRQFHGIPNDILMNLEKKDLVWERYYDLSSQE
          L.RA..EIVLKRGWAQL.EKALNLSKMVG.RMWSVQTPL.QF.GIP..ILM..EK..LVWERYYDLSSQE
Retrocopy LLRAIFEIVLKRGWAQLSEKALNLSKMVGKRMWSVQTPLWQFPGIPKEILMKVEKNNLVWERYYDLSSQE

Parental  LGELIRSPKMGRPLHKFIHQFPKLTLSAHVQPITRTVLKVELTVTPDFLWDEKIHKYVEPFWIIVEDNDG
          LGELIR.PKMGRPLHK.IHQFPKL.L.AHV.PI.R.VL.V.LTVTPDF.WD.K.HKYVEPFWIIVEDNDG
Retrocopy LGELIRNPKMGRPLHKHIHQFPKLNLAAHVLPISRSVLQVKLTVTPDFHWDDKAHKYVEPFWIIVEDNDG

Parental  EKILHHEYFLLKQQYIDEDHTLNFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLILPEKYPPPTE
          EKILHHEYFLLK..YIDEDHTLNFTVPI.EP.PPQYF.RVVSDKWL.S.TVLPVSFRHLILPEKYPPPTE
Retrocopy EKILHHEYFLLKKHYIDEDHTLNFTVPISEPIPPQYFIRVVSDKWLDSPTVLPVSFRHLILPEKYPPPTE

Parental  LLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILRNHQEG
          LLDLQPLPV.ALRNP.YE.LYQDFKHFNPVQTQVF.VLYNT.DNVLVAAPTGSGKTICAEFAILRNH.EG
Retrocopy LLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFSVLYNTSDNVLVAAPTGSGKTICAEFAILRNHLEG

Parental  PDATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRW
          PD.TMRVVY.APLEAIAKEQFR.WE.KFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRW
Retrocopy PDSTMRVVYVAPLEAIAKEQFRDWEKKFGKGLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRW

Parental  KQRKYVQQVSLFIVDELHLIGGQGGPVLEVIVSRMRYISSQVNNKIRIVALSTSLANAKDLGEWIGASSH
          KQRKY.QQVSLFIVDELHLIGGQGGPVLEVIVSRMRYISSQV.NKIRIVALSTSLANAKDLGEWIGASS.
Retrocopy KQRKYIQQVSLFIVDELHLIGGQGGPVLEVIVSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIGASSC

Parental  GLFNFPPGVRPVPLEIHIQGVDISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMA
          G.FNFPP.VRPVPLEIHI.GVDI.SFEARMQAMTKPTYTAIVQHA.NKKPAIVFVPTRKHV.LT.VDL.A
Retrocopy GFFNFPPNVRPVPLEIHIHGVDILSFEARMQAMTKPTYTAIVQHARNKKPAIVFVPTRKHVHLTDVDLIA

Parental  YSHMDNPQSPDFLLGQLEELDPFVSQIREETLKETLRHGIGYLHEGLSSLDQEIVTQLFEAGRIQACVMS
          YSHMDN.Q.P.FLLG.LEEL.PFV.QI.EETLKETLRHG.GYLHEGLS.LDQEIVTQLFEAGRIQ.CVMS
Retrocopy YSHMDNMQNPHFLLGNLEELEPFVKQICEETLKETLRHGVGYLHEGLSNLDQEIVTQLFEAGRIQVCVMS

Parental  SSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHAPQKEYYKKF
          SSLCWGTPL.AHLVVVMGTQ.YDGRENSH.DYP..DLLQMMGR.SRPLLDNAGKCVIFCHAP.KEYYKKF
Retrocopy SSLCWGTPLKAHLVVVMGTQFYDGRENSHLDYPISDLLQMMGRGSRPLLDNAGKCVIFCHAPRKEYYKKF

Parental  LYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNPNYYNLQGVSHRHLSDHLSE
          LYEAFPVES.LQHFLHDNFN.EVVA.VIENKQDAVDYLTW.FMYRRLPQNPNYYNL.GVSHRHLSDHLSE
Retrocopy LYEAFPVESHLQHFLHDNFNSEVVARVIENKQDAVDYLTWSFMYRRLPQNPNYYNLLGVSHRHLSDHLSE

Parental  LVENTLSNLEASKCIEIEDEMELSPLNLGMIASYYYISYTTIERFSSLLSSKTKMKGLLEILTSASEYDM
          LVENTLS.LE.SKCIEIE.E..LSPLNLGMIASYYYI.YTTIERFSSLL.SKTKMKGLLEILTSASEYD.
Retrocopy LVENTLSDLEVSKCIEIENELDLSPLNLGMIASYYYINYTTIERFSSLLASKTKMKGLLEILTSASEYDL

Parental  IPIRPGEEDTVRRLINHQRFSFENPKCTDPHVKANALLQAHFSRQNIGGNLAMDQRDVLLSATRLLQAMV
          IPIRPGEED.V.RLINHQRFSFENPKC.DP.VK.NALLQAHFSRQ.I.GNLAMDQR.VLLSATRLLQAMV
Retrocopy IPIRPGEEDAVWRLINHQRFSFENPKCADPRVKTNALLQAHFSRQKISGNLAMDQREVLLSATRLLQAMV

Parental  DVISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQ
          DVISSNG.L.LA.LAMEVSQMVTQGMW.RDSMLLQLPHFTKDLAKR.QENPG.NIET.FDLVEME...RQ
Retrocopy DVISSNGTLDLAILAMEVSQMVTQGMWDRDSMLLQLPHFTKDLAKRWQENPGNNIETIFDLVEMEEDKRQ

Parental  ELLKMSDAQLLDIARFCNRFPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKE
          ELL.MSDAQLLDIARFCNRFPNIDLTYEIVGS.EV.PGK..TLQV.LERDMEGRT.VGPVD..RYPKTKE
Retrocopy ELLQMSDAQLLDIARFCNRFPNIDLTYEIVGSNEVSPGKDITLQVILERDMEGRTKVGPVDAPRYPKTKE

Parental  EGWWLVVGDTKTNQLLAIKRVSLQQKAKVKLDFTVPSEPGEKSYTLYFMCDSYLGCDQEYSFSVDVKGSG
          EGWWLVVG.TKTNQL.AIKR.SLQ.KAKVKL.....SEPGEKSYTLYFMCDSYLGCDQEYSF.VDVK.S.
Retrocopy EGWWLVVGETKTNQLMAIKRISLQRKAKVKLG----SEPGEKSYTLYFMCDSYLGCDQEYSFTVDVKDSD

Parental  AGDHMEE
          A.DHMEE
Retrocopy AADHMEE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Arabidopsis lyrata was not studied using RNA-Seq expression data.

ChIP-Seq

Arabidopsis lyrata was not studied using ChIP-Seq data.

EST

Arabidopsis lyrata was not studied using EST data.

TSS

Arabidopsis lyrata was not studied using FANTOM5 data.

Lab

retro_alyr_6 was not experimentally validated.

Homology

Retrocopy orthology:

Arabidopsis lyrata does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Arabidopsis thaliana	AT1G20960	1 retrocopy	retro_atha_3,
Arabidopsis lyrata	fgenesh2_kg.1__2288__AT1G20960.1	1 retrocopy	retro_alyr_6 ,