RetrogeneDB ID: | retro_amel_1192 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193023.1:314875..315343(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FOLR4 | ||
Ensembl ID: | ENSAMEG00000011928 | ||
Aliases: | None | ||
Description: | folate receptor 4, delta (putative) [Source:HGNC Symbol;Acc:32565] |
Percent Identity: | 52.53 % |
Parental protein coverage: | 60.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | TSWEAHLDASLLYTFSLLHCGVMMPG-CEKHFLQAICFYECSPNLGPWIQKMDSSGPGERILDAPLCQED |
T.W..HLD..LLY.FSL.HC..M..G.C.KHF.QA.CFYECS.NL.PW.Q..D..G.GE......LC.E. | |
Retrocopy | TNWKTHLDEFLLYNFSLVHCRMMTLG>CQKHFIQAVCFYECSLNLRPWSQLVDPTGQGEPTSGMTLCWEN |
Parental | CEQWWEDCRTSYTCKSNW-HGDWNRSGGKNRCPARAICHPFPHYF-PTPADLCEKIWNHSFKASPEPRNS |
CE..W..CRT.YTC..NW..G.W..S.G....P.............P.PADLCEKI...S..A.P..RNS | |
Retrocopy | CER*WAKCRTVYTCRANW<AGSWDWSWGEEPLPCQGLLXXXXSLLLPLPADLCEKIGSNSLEANPRYRNS |
Parental | GQCLQKWFEPAQGNPNVA |
GQ.LQKWF.PA...PNVA | |
Retrocopy | GQYLQKWFRPA*RHPNVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011928 | 2 retrocopies |
retro_amel_1133, retro_amel_1192 ,
|
Equus caballus | ENSECAG00000007254 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000032394 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000014952 | 1 retrocopy |