RetrogeneDB ID: | retro_amel_1288 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193153.1:840514..840909(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB7 | ||
Ensembl ID: | ENSAMEG00000011470 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa [Source:HGNC Symbol;Acc:7702] |
Percent Identity: | 58.52 % |
Parental protein coverage: | 95.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MGAHLARRYVSDPSGEPDPQRMPTFPP-DYGFPGRKEREMVATQQQMSDAQLVLQQRDYCAHYLIRLLKC |
MGAHLA...........DP...P..P....GFPGRKE.E.VATQ.QM.D.QLV.QQR..C.H.LI.LL.C | |
Retrocopy | MGAHLALCSPANXXXXLDPHGIPPSPLFPHGFPGRKEHERVATQPQMNDVQLVIQQREDCTH*LIQLLQC |
Parental | KRDSFPNFLACKHEQHDWDYCEHLDYVMR-MKEFERERRLLQ-RKKRREQREAEVARGQ-GPGEV |
K..SFPNFLAC.H.QHD.D.CEH.D.VMR..K..E....LLQ..KKR..Q.EA..ARGQ.GPGEV | |
Retrocopy | KHASFPNFLACEHQQHDSDDCEHADHVMR<QKASEQQQGLLQ<GKKRQKQKEADAARGQ>GPGEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011470 | 1 retrocopy |
retro_amel_1288 ,
|
Canis familiaris | ENSCAFG00000016258 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000015213 | 1 retrocopy | |
Mus musculus | ENSMUSG00000033938 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009615 | 1 retrocopy |