>retro_amel_1297
GCAGACAGTGCTTCTATGAGGCAGTGCGCGAGGCAGGGAAAGCACTGTGAGAAGTCCTCCGCTAACCTTTCTGTGTCTCT
GGATAGTACGCCTTCAGAAATCTTGCGAAGATCTTTTCCCACTTGGATGCCGGGACCTGCTGTGTGCTGGATGTGTGAAT
AGGCTCTTTCATCATCTGGCCAATGACCTTTTTATTTGGATCAGAATCTCTTCAACTGCCTTTTCACCTAAAAGATCTAA
TTGGAAAGTTATTTCAGCAGAGAAGACCGTTGTATCTACGAACTTACTATCAGTCGAGGGTAAAGAACGTGGGTATTGGA
AGAAAGAATCTATCACAGAACAAAGAGCATCTGCAAAAACAGCACTCGCTCAGGTTCTCAAACCTGTCAACCCTTACACA
GGCCTTCCAGTTCAAACCTAAGAGGCCCTCAGAATATCTGGGTTAGGTCGGGTGATTATATTGAAAGAAAAAAGTGGAAA
AGAATACATCATGGAGTGCATTGACCTTTCCTTAAATGATTCATCAGTGACGATTATGTGGTATGGCCAGAATTTGCCAC
AGCTAGCCACATTGTCAACTTTAGATTTGTGTGGTATGACACTAGTTTTGTGAACCAGTCTCCAACCCCCTCCAAAAACA
GGCCTCGGTGGCATTCTTTAGTTGCAAAGTATCACCTGAGTAACTTAACTGAATCCACCATGATGGCTGGGACAGACTCA
TTCGGGTCTTCTGCTTACACCCAGGCCTCCTGGTGGGGCTGTGGAAGAGGGAGGAAGAACTGGCTTTTGTTACAGCAGAT
CTTCATTTCCATCACTTTGTGGAAAAGAGCACATTAGGCTCAGCCACTGTCCCCTATGAGCTATGTCCTCACACCCCCTT
TTGGATGACAACCCGGAGTATGGACTGCATGGCTACCAACTCCATGCTGATATGCACAGCAGTGGAATTTTCTACCTGCG
TGGCACATTTCTCAATCTCTTTACCAAGAAAGGATACATTGAAAATGGATATGTGAAGCTTGTTGTTGTAAGTTTTAAAA
ATAACACAGAACAGCTACCAATAGTA
ORF - retro_amel_1297 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.28 % |
Parental protein coverage: |
77.27 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
5 |
Retrocopy - Parental Gene Alignment:
Parental | AGNTALRQCAGRGKCCELPSTRSPVSLESIPSEIL-LKIFSYLDAVT-LLCTGCVNRHFYHLANDNFIWI |
| A.....RQCA..GK.CE..S....VSL.S.PSEIL..KIFS.LDA.T.LLC.GCVNR.F.HLAND.FIWI |
Retrocopy | ADSASMRQCARQGKHCEKSSANLSVSLDSTPSEIL<AKIFSHLDAGT<LLCAGCVNRLFHHLANDLFIWI |
|
Parental | RIYSTAFSPKRSNWKVNSAEKTAVSMNSLSVEDKEPGYWKKEYITKQRASVKAALAQVLKPVNPYTGLPV |
| RI.STAFSPKRSNWKV.SAEKT.VS.N.LSVE.KE.GYWKKE.IT.QRAS.K.ALAQVLKPVNPYTGLPV |
Retrocopy | RISSTAFSPKRSNWKVISAEKTVVSTNLLSVEGKERGYWKKESITEQRASAKTALAQVLKPVNPYTGLPV |
|
Parental | QTKEALRISGLGWVIILKEKNGREYIMEHIDLSINDSSVTIMWYGKTWPQLATLSTLDLCGVTPL-FMDR |
| QT.EALRISGLG.VIILKEK.G.EYIME.IDLS.NDSSVTIMWYG...PQLATLSTLDLCG.T...F... |
Retrocopy | QT*EALRISGLGRVIILKEKSGKEYIMECIDLSLNDSSVTIMWYGQNLPQLATLSTLDLCGMTLV<FVNQ |
|
Parental | SKTPSKNGPRWHSLIAKYNLSNLTESTMI-GWDRLIRIFCLHPGLLVGLWKGEEELAFVMANLHFHHLVE |
| S.TPSKN.PRWHSL.AKY.LSNLTESTM..GWDRLIR.FCLHPGLLVGLWK.EEELAFV.A.LHFHH.VE |
Retrocopy | SPTPSKNRPRWHSLVAKYHLSNLTESTMM<GWDRLIRVFCLHPGLLVGLWKREEELAFVTADLHFHHFVE |
|
Parental | KSTLGSATVPYELPPHT-PLLDDSPEYGLHGYQLHVDMHSSGIFCLCGTFRNLFTKKGSIENGYVKLVVI |
| KSTLGSATVPYEL.PHT.PLLDD.PEYGLHGYQLH.DMHSSGIF.L.GTF.NLFTKKG.IENGYVKLVV. |
Retrocopy | KSTLGSATVPYELCPHT<PLLDDNPEYGLHGYQLHADMHSSGIFYLRGTFLNLFTKKGYIENGYVKLVVV |
|
Parental | SFKNNTEHLPLI |
| SFKNNTE.LP.. |
Retrocopy | SFKNNTEQLPIV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_1297 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_1297 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.