RetrogeneDB ID: | retro_amel_1445 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193378.1:417344..417751(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL18 | ||
Ensembl ID: | ENSAMEG00000015398 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L18 [Source:HGNC Symbol;Acc:14477] |
Percent Identity: | 67.36 % |
Parental protein coverage: | 78.33 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | ENAAVAPEFTNRNPRNLELLGVARKERGWGTAWPSREFWHRLRVIR-TQHHVEAL-VEHHNGQVVVSAST |
E..A....FTN.N...LEL..VARKE.G.GT.WPS.E....LRV...T..HV.AL.VE...G.VVVS.ST | |
Retrocopy | EKEAFDRVFTNQNSQHLELVAVARKEQGQGTMWPSPE----LRVLK>TERHVAAL<VELCSG*VVVSVST |
Parental | R-EWAIKKHLYCTKNVVACESIGRVLAERCLEAGINFMVYQPTPWEAASDSMKRLQSAMTEGGVVLQEPR |
..EWAIK.HLY.TKNVVACES.G.VLAERCLEAG..F.VYQPTPWEAASDSMK.LQ.A..EGG.VLQEP. | |
Retrocopy | Q<EWAIK-HLYSTKNVVACESKG*VLAERCLEAGPSFTVYQPTPWEAASDSMK*LQRAVREGGGVLQEPQ |
Parental | RIYE |
RIYE | |
Retrocopy | RIYE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000015398 | 1 retrocopy |
retro_amel_1445 ,
|
Dipodomys ordii | ENSDORG00000011514 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007591 | 1 retrocopy | |
Homo sapiens | ENSG00000112110 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000014075 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017037 | 1 retrocopy | |
Mus musculus | ENSMUSG00000057388 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007327 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000017147 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000018761 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005322 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000005598 | 1 retrocopy |