>retro_amel_1537
ACCAAGAATCTGGACATTCAGTGTAAGCAGTTGAGTGATGCTAGTTGGAGAGAGTTCCCGCCTCTGATCCAACTGTTTGA
GGTGGTCAGGCTGGATGACAGGGGCCTCAAAGAGCTGTGTTGAAAGGATGTCACCTGTGCTCTCTGGGCCAACCTCTCCC
TGACTGAGGTAGCCTTTGCACCAAAGAGCTGGGTGATGCTGGTAGGCACCTGGTGCTCCAGGGCCTGTAGAGCCCCACCT
GCAAGATATAGAAGCTCAGCCTCCAGAACTGCTGCCTGATGGAGGCTGGCTGTGGAGTCCTGCCCTGCGTGCTGCACTTG
GTGCCCGTCCTGCATGAACTGCACTTCAGAGACAATTCGTTGGCAGATGCAGGCCTGCAGCTGTTCTCCAAAGATCTCCT
GGACTCCCAGTGCCACCTTGAGACACTTCAGCTGGAGTACTGCAACCTGACAGCTGCCAGTTGTGAGCCCCTAGCTGTGG
TGTTCAAAGGCCAAGCCACACTCCAAGGAGCTCATGGTGACCAACAATGACATCTGTGAGGGGGCATCTGAGTGCTGTAC
CAGGGCCTGGTAGACTCTGCCTTTCAGTTGGAGATGCTCAAGTTGGAGAACTGTGGCTTCACGTTGGCCAATGGTAAGGA
TCTGTGTAGTATTGTGACCTCCAAGGTGCTGGACCTGGGTGACAAGCTGGGTGACCTGGGTATTGTCGAGATGTGCCCCA
AAATGCTACACCCCAGCTCCTGACTCAGGGCCCTGTGGCTCTGGGACTGTGACATCACCACTAGGGGCTGCAGAGACCTG
TGCCACGTCCATAGGGCCAAGGAGAGCCTGAAGAATTGAGCCTGGTGGGCAATGTGCTGGGGGACAAGGGTGCCTGGCTA
CATGTGAGAGCCTGTGGGAACCTGGCTGCCAGATGCAGTATCCATGGGTGAAGTCCTGCAGCTTACGGCCATCTGCTGCC
ACCATTTCAGCATGACATAGACCCAAAATAGTATCTCATGGAGTTGCAGATGAGCAACAACAAGCTAGGGGATTCTGGAG
TCCGGGAGCTCTGCCGAGGTCTGGGCCATCCTGGCACCCCACTGTGAGCGCCCTGGCTGGGGGAATGCGACTGATGGACA
GTGGCTGTAGCAGCCTGGCCTTGCTCCTGCTGGCCAACCCCAGCCTGCACAAGCAGGAATTCAGGCAACAACTACATGTG
CTCTGAAATAGCATGGCATCTACTGGAT
ORF - retro_amel_1537 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
62.12 % |
Parental protein coverage: |
91.03 % |
Number of stop codons detected: |
7 |
Number of frameshifts detected |
9 |
Retrocopy - Parental Gene Alignment:
Parental | TMSLDIQCQQLSDARWTELLPLLQQSEVVRLDDCGLTEMRCKDISSALQANPSLTEL-SLCTNELGDAGV |
| T..LDIQC.QLSDA.W.E..PL.Q..EVVRLDD.GL.E...KD...AL.AN.SLTE..SLCT.ELGDAG. |
Retrocopy | TKNLDIQCKQLSDASWREFPPLIQLFEVVRLDDRGLKELC*KDVTCALWANLSLTEV<SLCTKELGDAGR |
|
Parental | HLVLQGLQSPTCKIRKLSLQNCCLTKTGCGVLPDMLRSMPTLRELYLNDNPLGDAGLQLLCSGLLDPQCH |
| HLVLQGL.SPTCKI.KLSLQNCCL...GCGVLP..L...P.L.EL...DN.L.DAGLQL....LLD.QCH |
Retrocopy | HLVLQGL*SPTCKI*KLSLQNCCLMEAGCGVLPCVLHLVPVLHELHFRDNSLADAGLQLFSKDLLDSQCH |
|
Parental | LEKLQVEYCNLTAASCESLASALR-AKRHFKELAVSNNELGEA-GVRVLCRGLVDSACQLEVLKLENCGL |
| LE.LQ.EYCNLTAASCE.LA.....AK.H.KEL.V.NN...E..G..VL..GLVDSA.QLE.LKLENCG. |
Retrocopy | LETLQLEYCNLTAASCEPLAVVFK>AKPHSKELMVTNNDICEG<GI*VLYQGLVDSAFQLEMLKLENCGF |
|
Parental | TSASCEDLCGVVASKPSLQELDLGDNKLGDQGIATLCPRLLHPSCQIRVLWLWDCDITTAGCRDLCRVLR |
| T.A...DLC..V.S......LDLGD.KLGD.GI...CP..LHPS...R.LWLWDCDITT.GCRDLC.V.R |
Retrocopy | TLANGKDLCSIVTS----KVLDLGD-KLGDLGIVEMCPKMLHPSS*LRALWLWDCDITTRGCRDLCHVHR |
|
Parental | AKESLK-EMSLAGNALGDEGARL-LCESLLEPACQLQSLWVKSCS-FTAASCQHFSSMLTRNTC-LVELQ |
| AKESLK.E.SL.GN.LGD.GA.L..CESL.EP.CQ.Q..WVKSCS..TA..C.HFS...T.N...L.ELQ |
Retrocopy | AKESLK<ELSLVGNVLGDKGAWL<TCESLWEPGCQMQYPWVKSCS<LTAICCHHFSMT*TQNSI<LMELQ |
|
Parental | LSNNKLGDCGVQQLCQGLSQPGAALQVLWLGDCD-VAHSGCASLASVLLVNRSLRELDL-SNNCMGEEGI |
| .SNNKLGD.GV..LC.GL..PG..L...WLG.CD....SGC.SLA..LL.N.SL.......NN.M..E.. |
Retrocopy | MSNNKLGDSGVRELCRGLGHPGTPL*APWLGECD<LMDSGCSSLALLLLANPSLHKQEF>GNNYMCSEIA |
|
Parental | LRLME |
| ..L.. |
Retrocopy | WHLLD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_1537 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_1537 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.