RetrogeneDB ID: | retro_amel_1762 | ||
Retrocopy location | Organism: | Panda (Ailuropoda melanoleuca) | |
| Coordinates: | GL194233.1:105427..105744(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSAMEG00000012656 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | DRAP1 | ||
| Ensembl ID: | ENSAMEG00000017278 | ||
| Aliases: | None | ||
| Description: | DR1-associated protein 1 (negative cofactor 2 alpha) [Source:HGNC Symbol;Acc:3019] |
Retrocopy-Parental alignment summary:
>retro_amel_1762
CAGTTGGACTTCTTGAAGGACCTGGTGGCTTCTGTGCCTGACATGCAGGGAGACTGGGAAGATAATCACATGGAAAGGGA
CAAGGGTCCCCACAGGGGCTGGAAGCCAGGCAGCAGGGGCTGGAAGAATGGTAGGATGGGAAGCAAAGGCAAGGAAAAGA
AGCTGTCAGGGATGGACTTGGAGCAGAAGATGAGTCTTGAGGACACAGAGGCTGACAGGGAAGAGGAGACACCACAGCTT
CCACCTCAGGCCAGCCACCCCCTGCCCACTTTAAGTCCCCTCACACCCCTCCTGTCCTTCACCTTGTCTCTGCCTCT
ORF - retro_amel_1762 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 66.36 % |
| Parental protein coverage: | 54.77 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | QFDFLKDLVASVPDMQGDGEDNHMDGDKGTRRRGRKPGSSGRKNGGMGSKSKDKKLSGTDSEQEDESDDT |
| Q.DFLKDLVASVPDMQGD.EDNHM..DKG..R.G.KPGS.G.KNG.MGSK.K.KKLSG.D.EQ.....DT | |
| Retrocopy | QLDFLKDLVASVPDMQGDWEDNHMERDKGPHR-GWKPGSRGWKNGRMGSKGKEKKLSGMDLEQKMSLEDT |
| Parental | DTDGEEETSQAPPQASHP-PAHFQSFLPCSPPTPFMPFAS |
| ..D.EEET.Q.PPQASHP.PAHF.S..P..PP......AS | |
| Retrocopy | EADREEETPQLPPQASHP<PAHFKS--PHTPPVLHLVSAS |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_1762 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_1762 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 3 parental genes, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017278 | 1 retrocopy |
retro_amel_1762 ,
|
| Mustela putorius furo | ENSMPUG00000011429 | 1 retrocopy | |
| Sarcophilus harrisii | ENSSHAG00000000960 | 1 retrocopy |