>retro_amel_1799
GACACCAAGGATGAATCAGCCAGTGCTGAGGAAGAGTTGCTTCCAGGTGTGCATGTACTCTTAGAGGTGTTCCCTCCTTA
TTCAGTGGAGCAGGCCCAGTGGATACTAGCAACAGCTCAGGGAGACTTGGAAGAATTTGTGCAAATGTTGGTAGAGGGGA
AGGAGGAGGGGACTCCAGCTTGGAATGGCCCCAACCAGGACCTGCCCAGATGCCTCAGAGGGTCCTTAAAAGGAACTGAA
ATGCTTCATCTTGCAGAAGTACATGATGGTGGATAACACAGAGTTTCAGGAGATTACCAGCGCATGGCTCCCAGGGAGGC
CCTCAAGAAGCTGATCCAATAAATCAACAACCAGATAGTGAGCACCAAAGGGGAGGGATTCAAAGATGTGCAGAACCCTG
AAGCCAAGGAGATGAAGGCCACATACATCAAACTCAAACTAGCCAGGAATTACCATTTCCAC
ORF - retro_amel_1799 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.8 % |
Parental protein coverage: |
54.2 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | DTQDEAAGAEEELLPGVDVLLEVFPTCSVEQAQWVLAKARGDLEEAVQMLVEGKEEGPPAWDGPNQDLPR |
| DT.DE.A.AEEELLPGV.VLLEVFP..SVEQAQW.LA.A.GDLEE.VQMLVEGKEEG.PAW.GPNQDLPR |
Retrocopy | DTKDESASAEEELLPGVHVLLEVFPPYSVEQAQWILATAQGDLEEFVQMLVEGKEEGTPAWNGPNQDLPR |
|
Parental | RLR-GPQKDELKSFILQKYMMVDSAEDQKI-HRPMAPREAPKKLIRYIDNQVVSTKGERFKDVRNPEAEE |
| .LR.GP.K..LK.FILQKYMMVD..E.Q.I....MAPREA.KKLI..I.NQ.VSTKGE.FKDV.NPEA.E |
Retrocopy | CLR>GP*KE-LKCFILQKYMMVDNTEFQEI<YQRMAPREALKKLIQ*INNQIVSTKGEGFKDVQNPEAKE |
|
Parental | MKATYINLKPARKYRFH |
| MKATYI.LK.AR.Y.FH |
Retrocopy | MKATYIKLKLARNYHFH |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_1799 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_1799 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.