RetrogeneDB ID: | retro_amel_1890 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL195286.1:8066..8909(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PRKAG2 | ||
Ensembl ID: | ENSAMEG00000013406 | ||
Aliases: | None | ||
Description: | protein kinase, AMP-activated, gamma 2 non-catalytic subunit [Source:HGNC Symbol;Acc:9386] |
Percent Identity: | 59.18 % |
Parental protein coverage: | 50.62 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | VFDTTLQVKKA-FFALVANGVRAAPLWESKKQSFVGMLTITDFINILHRYYKSPMVQIYELEEHKIETWR |
V....LQV.KA.F.AL.ANGV.AA.L....KQ.FVG.LTIT.F.N.......S..VQIYELE..KIET.R | |
Retrocopy | VLSLILQVRKA<FCALAANGVPAALLR*RTKQCFVGILTITEFLNTPQTWHTSTLVQIYELEARKIETGR |
Parental | ELYLQETFKPLVNISPDASLFDAVYSLIKNKIHRLPVIDPISG-NALYILTHKRILKFLQLFMSDMPKPA |
EL..QET.KP..NI.PDA..F.A..SLI.N.IH.L.VIDPIS...AL...THK.IL.F.Q.F.S..PKPA | |
Retrocopy | ELHPQETRKPSGNIAPDAKVFHAENSLITNEIHSLSVIDPISR<SALCTRTHKGILTFVQHFRSGLPKPA |
Parental | FMKQNLDALGIG-TYHNI-AFIHPDTPIIKALNVFVERRVSALPVVDESGKVVDIYSKFDVINLAAEKTY |
FMKQNLD.L..G...HNI..FI...TPI..AL..FVER...A..VV.ESG..VDIYSK.D.I.LA.EKT. | |
Retrocopy | FMKQNLDVLAFG<AHHNI<PFILQETPISTALKIFVERQLLAFLVVNESGEIVDIYSKSDLIKLAVEKTF |
Parental | NNLD-ITVTQAL-QHRSQYFEGVVKCSKLEILETIVDRIVRAEVHRLVVVNEADSIVGIISLSDILQALI |
.NL..ITVTQAL.QH.SQ..EGVV....LEIL.....R...A....LV...EADSI.G.ISL.D...ALI | |
Retrocopy | SNLE<ITVTQAL<QHCSQCLEGVVMYGNLEILD----RLAWADLGLLV-ASEADSIMGVISLPDVW*ALI |
Parental | LTPAGAKQKEAEAE |
L.PAGAKQKE.EAE | |
Retrocopy | LMPAGAKQKETEAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006964 | 2 retrocopies | |
Ailuropoda melanoleuca | ENSAMEG00000013406 | 1 retrocopy |
retro_amel_1890 ,
|
Felis catus | ENSFCAG00000003842 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000008645 | 1 retrocopy |