RetrogeneDB ID: | retro_amel_1905 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL195482.1:21872..22176(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNRPD1 | ||
Ensembl ID: | ENSAMEG00000002576 | ||
Aliases: | None | ||
Description: | small nuclear ribonucleoprotein D1 polypeptide 16kDa [Source:HGNC Symbol;Acc:11158] |
Percent Identity: | 70.19 % |
Parental protein coverage: | 87.18 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | IELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFI-LPDSLPLDTLLVDVEP |
I.LKNGTQVHGTITGV.VSM.THL.A.K.T.KNRE..QLE.L.I.GNNI.YFI.LPDSLPLDTLL.DV.P | |
Retrocopy | IKLKNGTQVHGTITGVEVSMKTHLTAMKITPKNRETIQLEMLNIQGNNI*YFI<LPDSLPLDTLLMDV*P |
Parental | KVKSK-KREAVAGRGRGRGRGRGRGRGRGRGGPR |
K......REA.AGRG.G..R.R..G.GR.RGGPR | |
Retrocopy | KMRYR<IREAIAGRGQG*ERERNHGQGRERGGPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002576 | 1 retrocopy |
retro_amel_1905 ,
|
Bos taurus | ENSBTAG00000008292 | 3 retrocopies | |
Mustela putorius furo | ENSMPUG00000005567 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000006822 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000023761 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007833 | 1 retrocopy |