>retro_amel_444
CCAGCTCCCCAGTCAGCCACTCATCCAGTACCTGTAAGTGCTGGCCAACCACAAGATAGGTCTGAGACATCAGATGTGTA
CATGGTTGTTGATGTCACCTACAATGCTGGTGTTCTCCAGGTGGAGAAAAGCACCAGGTGCAAAAAGATCACTTAATATG
GATGGCCATGAAATGCATTGAGGACAACTCCAATTTACTCTCTCACATTCTTATAGTCTTACTAAATTTAGAAGAAAAGG
AAACACCCAAAGGATGAAACAAAACCTGACCAGAATGCAAACCGACCCCATGGGTTTAAGAGAGAAAACAGAGAAGAACT
GACCCTTGAGTGGATTAGAAATGGTAGTGTGAGCAATCCAGGTCCCTTTCCTCAACTTTTACTGCCAAGAGACCAAGTTT
TAAGCAAAACAAGGTATCTGACGGAAGATATTTCCAGTACAGAGATCCAGGTGGAGATGAAGAGATCAGCCTATGAATTA
AAAATTGTGGCTGCTCAGACTGAGAAACCCCTGAAAATTGACCTAGAAGTTAAATCACCTGATAGTAATTCAGTATGTCT
CTGTGACCTTAGTATTTCTGAGGATGATTTATTGATCGAGGTCTCAGAGAAGTACAGATTACATCTGAATCTTCCAGAAT
CTGTGCATACTGAAATGACTACAGCAAAATTTATCAAAGAGAAAGCTACATTAATCATCACAATGCCGCTGGTG
ORF - retro_amel_444 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
71.6 % |
Parental protein coverage: |
75.8 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | PAPQSTTHPVPLSVGRPEDMSETSDVYTVIDVAYNPDVLQA-AEKDQVKKDQLIRMAMKCIEE-QFQFTL |
| PAPQS.THPVP.S.G.P.D.SETSDVY.V.DV.YN..VLQ...EK.QV.KD.LI.MAMKCIE..Q.QFTL |
Retrocopy | PAPQSATHPVPVSAGQPQDRSETSDVYMVVDVTYNAGVLQV<GEKHQVQKDHLIWMAMKCIED<QLQFTL |
|
Parental | SHFYSITKFRIKGSIQRMKQNLMGMQAD-PTNLREKMRKEELTLEQI-SSTASNPDHF-QLLLPKGEVSS |
| SH.YS.TKFR.KG..QRMKQNL..MQ.D.P.......R.EELTLE.I.....SNP..F.QLLLP...V.S |
Retrocopy | SHSYSLTKFRRKGNTQRMKQNLTRMQTD<PHGFKRENR-EELTLEWIRNGSVSNPGPFPQLLLPRDQVLS |
|
Parental | KTRCLIEEISSTEIQVEMKEPAYELKIVADQNEKPLEIEIKVELPGINSVSLCELSVSEDDLLIEVSEKY |
| KTR.L.E.ISSTEIQVEMK..AYELKIVA.Q.EKPL.I...V..P..NSV.LC.LS.SEDDLLIEVSEKY |
Retrocopy | KTRYLTEDISSTEIQVEMKRSAYELKIVAAQTEKPLKIDLEVKSPDSNSVCLCDLSISEDDLLIEVSEKY |
|
Parental | RLHLNLPESVHTEMTTAKFIKEKATLIITMPLV |
| RLHLNLPESVHTEMTTAKFIKEKATLIITMPLV |
Retrocopy | RLHLNLPESVHTEMTTAKFIKEKATLIITMPLV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Ailuropoda melanoleuca was not studied using RNA-Seq expression data.
Ailuropoda melanoleuca was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_amel_444 retrocopy.
Ailuropoda melanoleuca was not studied using FANTOM5 data.
retro_amel_444 was not experimentally validated.
Retrocopy orthology:
Ailuropoda melanoleuca does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.