RetrogeneDB ID: | retro_amel_532 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192489.1:1907681..1908239(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HENMT1 | ||
Ensembl ID: | ENSAMEG00000004357 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.06 % |
Parental protein coverage: | 50.95 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | RLSPGVGGFIIPRELDLTITLYRGSAVQKDSRLRGFDLITCIELIEHLDSEDLAKFPEVVFGYFSPGMVV |
.L.P..G....P..L.LT.TLY.G.AVQKDS.L.GFDLITCIEL.EHLDSEDL.KF.E.VFGYFSPGMVV | |
Retrocopy | KLTPTAGDYLAPWDLGLTVTLYHGFAVQKDSHLLGFDLITCIELMEHLDSEDLVKFLEAVFGYFSPGMVV |
Parental | ISTPNSEFN-PLFPASTFRNPDHRFEWDRKQFQTWALDVGKLYSYSVEFTGVGDPPAGAEHVG-YCTQIG |
ISTPNS.FN..LFP.STFR.PDH.FEW.R.QFQ.WALDV..LY.YS.EFTGVG.PP.GAEHVG.YCT.IG | |
Retrocopy | ISTPNSAFN<SLFPTSTFRKPDHKFEWNRIQFQMWALDVANLYNYSIEFTGVGAPPTGAEHVG<YCT*IG |
Parental | VF-QKNIAKATGSSISEPEEHVYEVVYRTSYPSLQQRKYFRFTLSIEVVKA |
...QKNIAKAT...ISEP.EHVY..V..TS.P..Q...Y....LS.EV.K. | |
Retrocopy | AY<QKNIAKATELCISEPQEHVYKAVLTTS*PR-Q*KVYLQLVLSAEVLKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004357 | 1 retrocopy |
retro_amel_532 ,
|
Otolemur garnettii | ENSOGAG00000013441 | 4 retrocopies | |
Sus scrofa | ENSSSCG00000006846 | 1 retrocopy |