RetrogeneDB ID: | retro_amel_613 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192527.1:686047..686575(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFS8 | ||
Ensembl ID: | ENSAMEG00000001217 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) [Source:HGNC Symbol;Acc:7715] |
Percent Identity: | 68.68 % |
Parental protein coverage: | 83.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | TYKFVNMREPSM-DMKSVTDRA-AQTLLWTELVRGLGMTLSYLFREPATINYPFEK-GPLSPRF--RGEH |
TYKF.N...PS..DM..VTDRA..QT.LW.ELVRGLG.TLSYLF.E.ATIN.P..K.GP.......RG.H | |
Retrocopy | TYKFLNTQKPSR<DMTAVTDRA<TQTRLWSELVRGLGVTLSYLFQEAATINGPLRK<GPAESTLWGRGLH |
Parental | ALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP |
AL..YP..EE...ACKLC.AVCPAQAITIEAEP..DGS.R.T.YD.DM.K.IY.GFCQ..CPVDA.V.GP | |
Retrocopy | ALCHYPTREEHYTACKLCDAVCPAQAITIEAEPTTDGSYRITHYDTDMPKRIYGGFCQGGCPVDATVKGP |
Parental | NFEFSTETHEELLYNK-EKLLSNGDKWEAEIA-ANIQADFLY |
NFEFSTETH..LLYN..EKLL.NG.KWEAEI..ANIQAD.LY | |
Retrocopy | NFEFSTETHKLLLYNR<EKLLVNGGKWEAEIS>ANIQADHLY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001217 | 2 retrocopies |
retro_amel_366, retro_amel_613 ,
|
Canis familiaris | ENSCAFG00000011083 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000015686 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000015013 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000017611 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004193 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013220 | 1 retrocopy |