RetrogeneDB ID: | retro_amel_633 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192539.1:118568..119082(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000006891 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CIDEB | ||
Ensembl ID: | ENSAMEG00000016089 | ||
Aliases: | None | ||
Description: | cell death-inducing DFFA-like effector b [Source:HGNC Symbol;Acc:1977] |
Percent Identity: | 65.91 % |
Parental protein coverage: | 77.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | VTAATRQELLDKALEALLLSGMLTLVLEEDGTAVESEDFFQLLEDDTCLMVLECGQSWS-PGRSG-MLSY |
..AAT.QELLDK..E...L...L..VLEEDGT..ES.DFFQLLEDDTCLMVL..G.SW..P.R.G..LS. | |
Retrocopy | IKAATCQELLDKVMETPQLTEVLRMVLEEDGTSMESKDFFQLLEDDTCLMVLDFGKSWT<PSRNG<VLSS |
Parental | GLGREKPKHSKDIARITFDIYKQNPRDLFGSL-NIKATFYGLYSMSCDFQGLGPKKVLRELLRW-TSALL |
G.GRE..KH.KDI..ITF.I.KQNP...FGSL.NIKATFY.LYSMSCD.QG.G.KKVL..LL...TS.LL | |
Retrocopy | GPGRENTKHRKDITLITFNI*KQNPWNFFGSL<NIKATFYKLYSMSCDSQGPGLKKVLSGLLHL>TSMLL |
Parental | QGLGHMLLGIASSLRHVVEGAEQW-HWQRQGRLHPY |
QGLG.MLLGI.S.L.H.VEGA.QW...Q..G.LHPY | |
Retrocopy | QGLGQMLLGISSTLHHAVEGAKQWEQQQKEGGLHPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016089 | 1 retrocopy |
retro_amel_633 ,
|
Canis familiaris | ENSCAFG00000012240 | 1 retrocopy | |
Equus caballus | ENSECAG00000010495 | 1 retrocopy | |
Felis catus | ENSFCAG00000026821 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007036 | 1 retrocopy |