RetrogeneDB ID: | retro_amel_792 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192640.1:742911..743462(+) | ||
Located in intron of: | ENSAMEG00000008496 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CREG1 | ||
Ensembl ID: | ENSAMEG00000000024 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.78 % |
Parental protein coverage: | 99.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | GLRTVAGVTVMAARA--RGSARVARFVTHVCDWGALATLSTEPAVRG----SILSLSDGPPGAGSGVPYF |
G.R..AG.T..A...........A.FVT..CDWGALATLSTE.AV.G.......SLSDGPPG.GS.VP.. | |
Retrocopy | GARGAAGITGTAVPLPHKDAEHMAHFVTCICDWGALATLSTEEAVHG*AFVDVFSLSDGPPGVGSSVPCS |
Parental | YLSPMQQSVGNLQENPHASLTMSLAQTNFCRKQGFDPQSPLCAHIILSGTVTKVNQTEMGFAKQSLFVRH |
..SP..Q.VGN.QENPHA....SLA.T.FCRKQ.FDP..PL.AHI.LSGTVT.VN..EM.FA..SLF..H | |
Retrocopy | CPSPLLQLVGNPQENPHATPAASLA*TDFCRKQVFDPHGPLSAHIMLSGTVTNVNEMEMDFARHSLFIQH |
Parental | PEMKTWPSSHNWFFAKLNISNIWVVDYFGGPKIVTPE-EYYNVTF |
P.MKTWPSSHNWFFAKLN..NIW..D.FGGPKIV.PE..YYNVTF | |
Retrocopy | PDMKTWPSSHNWFFAKLNLTNIWILDHFGGPKIVIPE<KYYNVTF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000024 | 1 retrocopy |
retro_amel_792 ,
|
Canis familiaris | ENSCAFG00000015414 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000027768 | 1 retrocopy |