>retro_apla_7
ATGACAGGGCAGAGTCTGAAGGCTTTATCTGAGGCAAATTTCGAAGACAATGAGATCAGCATCAACGTTGGAGGCTTTAA
GAAAAAGATGAGATCCAACACATTGCTAAGGTTCCCCGAGACCAGACTGGGCAAACTGCTGAGCTGCCACTCGAAGGAGT
CGATACTGGAGCTCTGCGACGACTATGATGACACCAAGAATGAATTTTATTTTGACAGGAACCCTGAGCTCTTCCCTTAT
GTGCTACACTTTTATAACACTGGCAAGCTCCATGTGATGGGTGAACTCTGTGTGTTTTCTTTCAGCCAGGAGATTGAATA
CTGGGGAATCAATGAATTCTTTATAGACTCATGCTGCAGTTACAGCTACCATGGGAGGAAAATGGAGCCAGACCAAGAGA
AATGGGAGGAACAAAGTGACCAGGAAAGTACCACATCGTCTTTTGATGAGATCTTGGCATTCTACAATGATGCCTCAAAG
TTTGACAAACAACCCTTTGGAAACATCAGGAGGCAGCTCTGGCTGGCTTTGGATAACCCTGGCTACTCAGTCTTAAGCCG
AATCTTCAGTGTCCTTTCAATAGTGGTGGTGCTGGGCTCCATCGTGACCATGTGCCTGAACAGCCTCCCAGACTTTCAGA
TTGTTGACAGCAACGGGACCCCCGAGGAGGACCCTCGCTTTGAAATCGTGGAACACTTTGGTATTGCATGGTTCACTTTT
GAACTGGTGGCGAGATTTGCAGTAGCTCCTGACTTTTTAAAATTTTTCAAGCATGCCCTGAATTTGATTGACCTAATGTC
TATCCTACCATTTTATATTACCTTAATTGTCAACTTGGTGGTGGAAAGTAGTCCGACCTTGGCAAATTTAGGCAGGGTTG
CACAAGTCCTGAGACTCATGAGGATCTTTCGCATCTTAAAGCTTGCTAGACACTCAACAGGTCTCAGGTCTCTTGGAGCC
ACCCTGAAGTATAGCTACAGAGAGGTAGGGCTTCTTTTACTTTACCTCTCTGTTGGCATCTCCATTTTCTCAGTTGTGGC
TTACACCATTGAAAAAGAAGAGAACGAGGGGTTAGCCACCATCCCTGCTTGTTGGTGGTGGGCTACGGTTAGCATGACCA
CGGTTGGCTACGGGGATGTTGTGCCAGGGAGCACTGCTGGCAAGTTGACGGCATCTGCATGCATCCTAGCCGGTATCCTA
GTGGTAGTGCTTCCCATTACACTGATCTTCAATAAATTCTCCCACTTCTACAGGCGTCAGAAGCAGTTAGAGAGTGCCAT
GAGAAGCTGTGATTTTGGCGATGGCATGAAAGAAGTTCCATCGGTCAATTTAAGGGACTACTATGCTTATAAAGTTAAAT
CCCTTATGGCCAGTCTTACCAATATGAGCAGGAGTACCCCCAGTGAGCTGAGCCTGAACGATTCACTGCATTAG
ORF - retro_apla_7 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
62.75 % |
Parental protein coverage: |
90.67 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | RRTLSTSTLSKFPDTRLGRLLSCDSEESILQLCDDYDVSAREFYFDRNPGFFLYVLHFYQTGKLHVMEEL |
| .......TL..FP.TRLG.LLSC.S.ESIL.LCDDYD....EFYFDRNP..F.YVLHFY.TGKLHVM.EL |
Retrocopy | KKKMRSNTLLRFPETRLGKLLSCHSKESILELCDDYDDTKNEFYFDRNPELFPYVLHFYNTGKLHVMGEL |
|
Parental | CVFSFCQEIEYWGINEFFLDSCCSYRYHERKLEGRHHNWDEESEVSSVDTSPDEISDINHELLRYSTLRC |
| CVFSF.QEIEYWGINEFF.DSCCSY.YH.RK.E.....W.E.S...S...S.DEI............... |
Retrocopy | CVFSFSQEIEYWGINEFFIDSCCSYSYHGRKMEPDQEKWEEQSDQESTTSSFDEILAFYNDASKFDKQPF |
|
Parental | GNARKRLWLTMENPGYSIPSKLFSFVSISVVLVSIATMCIHSMPEYQEADEAGNVLDEAVLHKLEYFCIS |
| GN.R..LWL...NPGYS..S..FS..SI.VVL.SI.TMC..S.P..Q..D..G...........E.F.I. |
Retrocopy | GNIRRQLWLALDNPGYSVLSRIFSVLSIVVVLGSIVTMCLNSLPDFQIVDSNGTPEEDPRFEIVEHFGIA |
|
Parental | WFTFEVSSRLLLSPNPKKFFKHPLNLIDIVSVLPFYFTLLVDLTMGSDSELGNLGKVVQVFRLMRIFRVL |
| WFTFE...R....P...KFFKH.LNLID..S.LPFY.TL.V.L...S...L.NLG.V.QV.RLMRIFR.L |
Retrocopy | WFTFELVARFAVAPDFLKFFKHALNLIDLMSILPFYITLIVNLVVESSPTLANLGRVAQVLRLMRIFRIL |
|
Parental | KLARHSTGLRSLGATLKHSYREVGILLLYLAVGVSVFSGVAYTAEKEEDVGFDTIPACWWWGTVSMTTVG |
| KLARHSTGLRSLGATLK.SYREVG.LLLYL.VG.S.FS.VAYT.EKEE..G..TIPACWWW.TVSMTTVG |
Retrocopy | KLARHSTGLRSLGATLKYSYREVGLLLLYLSVGISIFSVVAYTIEKEENEGLATIPACWWWATVSMTTVG |
|
Parental | YGDVVPVTVAGKLAASGCILGGILVVALPITIIFNKFSHFYRKQKALEAAVRNSEKKD |
| YGDVVP...AGKL.AS.CIL.GILVV.LPIT.IFNKFSHFYR.QK.LE.A.R.....D |
Retrocopy | YGDVVPGSTAGKLTASACILAGILVVVLPITLIFNKFSHFYRRQKQLESAMRSCDFGD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Anas platyrhynchos was not studied using RNA-Seq expression data.
Anas platyrhynchos was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_apla_7 retrocopy.
Anas platyrhynchos was not studied using FANTOM5 data.
retro_apla_7 was not experimentally validated.
Retrocopy orthology:
Anas platyrhynchos does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
5 retrocopies.