RetrogeneDB ID:

retro_atau_30

Retrocopy
location
Organism:Tausch goatgrass (Aegilops tauschii)
Coordinates:Scaffold150386:11676..12075(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:F775_32107
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_atau_30
ATGGCCCGCACGAAGCAGACGGCGAGGAAGTCCAAGGCGCCGAGGAAGCAGCTGGCCACCAAGGCGGCTCGCAAGTCCGC
CCCGGCCACCGGCGGCGTGAAGAAGCCGCACCGCTTCCGCCCGGGAACCGTGGCGCTCCGGGAGATCCGCAAGTACCAGA
AGAGCACGGAGCTGCTGATCCGCAAGCTCCCCTTCCAGCGCCTCGTGCGGGAGATCGCGCAGGACTTCAAGACCGACCTC
CGCTTCCAGTCCTCCGCCGTCTCCGCCCTTCAGGAGGCCGCCGAGGCCTATTTGGTGGGGCTCTTCGAGGACACCAACCT
GTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGGATCCGAGGGGAGCGCGCC

ORF - retro_atau_30 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.85 %
Parental protein coverage: 90.67 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQR
MARTKQTARKS...KAPRKQLATKAARKSAP.TGGVKKPHR.RPGTVALREIRKYQKSTELLIRKLPFQR
RetrocopyMARTKQTARKS---KAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQR
ParentalLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
LVREIAQDFKTDLRFQS.AV.ALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
RetrocopyLVREIAQDFKTDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Aegilops tauschii was not studied using RNA-Seq expression data.
Aegilops tauschii was not studied using ChIP-Seq data.
Aegilops tauschii was not studied using EST data.
Aegilops tauschii was not studied using FANTOM5 data.
retro_atau_30 was not experimentally validated.

Retrocopy orthology:
Aegilops tauschii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 11 retrocopies.

Species Parental gene accession Retrocopies number
Aegilops tauschii F775_32107 11 retrocopies



Copyright © RetrogeneDB 2014-2017