RetrogeneDB ID: | retro_atau_34 | ||
Retrocopy location | Organism: | Tausch goatgrass (Aegilops tauschii) | |
| Coordinates: | Scaffold17637:6083..6359(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | F775_32457 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_atau_34
CCCGGGGTGTCGGCGTTCCCGGAGGGGGACAACATCTTCCAGTGGGTCGGCACCATCGACGGATCCGCCGCCACCGCGTA
CGAGGGCACCTCCTACCGCCTCGCGCTCGCCTTCCCCAGCGACTACCCCTACAAGCCGCCCAAGGTGCGGTTCGAGACCC
CCTGCTTCCACCCCAACGTCGACAACCACGGCAACATCTGCCTCGACATCCTCCAGGACAAGTGGTCCTCCGCCTACGAC
GTCCGCACCATCCTCCTCTCCATCCAGAGCCTGCTC
ORF - retro_atau_34 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 52.17 % |
| Parental protein coverage: | 60.13 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | PGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAPPKVRFLTKIYHPNIDKLGRICLDI |
| PG.SA.P...N.......I.G.....YEG....L.L..P..YP..PPKVRF.T...HPN.D..G.ICLDI | |
| Retrocopy | PGVSAFPEGDNIFQWVGTIDGSAATAYEGTSYRLALAFPSDYPYKPPKVRFETPCFHPNVDNHGNICLDI |
| Parental | LKDKWSPALQIRTVLLSIQALL |
| L.DKWS.A...RT.LLSIQ.LL | |
| Retrocopy | LQDKWSSAYDVRTILLSIQSLL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Aegilops tauschii was not studied using RNA-Seq expression data.
Aegilops tauschii was not studied using ChIP-Seq data.
Aegilops tauschii was not studied using EST data.
Aegilops tauschii was not studied using FANTOM5 data.
retro_atau_34 was not experimentally validated.
Retrocopy orthology:
Aegilops tauschii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Aegilops tauschii | F775_32457 | 1 retrocopy |
retro_atau_34 ,
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