RetrogeneDB ID: retro_atau_34

Retrocopy location

• Organism: Tausch goatgrass (Aegilops tauschii)
• Coordinates: Scaffold17637:6083..6359(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: F775_32457
• Aliases: None
• Description: None

Sequence

>retro_atau_34
CCCGGGGTGTCGGCGTTCCCGGAGGGGGACAACATCTTCCAGTGGGTCGGCACCATCGACGGATCCGCCGCCACCGCGTA
CGAGGGCACCTCCTACCGCCTCGCGCTCGCCTTCCCCAGCGACTACCCCTACAAGCCGCCCAAGGTGCGGTTCGAGACCC
CCTGCTTCCACCCCAACGTCGACAACCACGGCAACATCTGCCTCGACATCCTCCAGGACAAGTGGTCCTCCGCCTACGAC
GTCCGCACCATCCTCCTCTCCATCCAGAGCCTGCTC

Alignment

ORF - retro_atau_34 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.17 %
• Parental protein coverage: 60.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAPPKVRFLTKIYHPNIDKLGRICLDI
          PG.SA.P...N.......I.G.....YEG....L.L..P..YP..PPKVRF.T...HPN.D..G.ICLDI
Retrocopy PGVSAFPEGDNIFQWVGTIDGSAATAYEGTSYRLALAFPSDYPYKPPKVRFETPCFHPNVDNHGNICLDI

Parental  LKDKWSPALQIRTVLLSIQALL
          L.DKWS.A...RT.LLSIQ.LL
Retrocopy LQDKWSSAYDVRTILLSIQSLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Aegilops tauschii was not studied using RNA-Seq expression data.

ChIP-Seq

Aegilops tauschii was not studied using ChIP-Seq data.

EST

Aegilops tauschii was not studied using EST data.

TSS

Aegilops tauschii was not studied using FANTOM5 data.

Lab

retro_atau_34 was not experimentally validated.

Homology

Retrocopy orthology:

Aegilops tauschii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Aegilops tauschii	F775_32457	1 retrocopy	retro_atau_34 ,