RetrogeneDB ID: | retro_atri_48 | ||
Retrocopylocation | Organism: | Amborella (Amborella trichopoda) | |
Coordinates: | AmTr_v1.0_scaffold00157:211232..211490(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | AMTR_s00104p00132470 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.58 % |
Parental protein coverage: | 65.15 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | QHNEVELSALGMAIATVVTIAEILKNNGLAIEKKIMTSTVDMKDESRGRPIQKAKIEILLGKTANFDELM |
QHNEVELSALGMAIA.VVTI..ILKNNGL.IEKKIM.ST.DMK.ESRG..I...KI.ILLGKTANF.ELM | |
Retrocopy | QHNEVELSALGMAIAIVVTIDGILKNNGLTIEKKIMNSTIDMKVESRG*SI*EEKIKILLGKTANFEELM |
Parental | AAAAEEREIAEGEEQS |
AA.A...EIA...EQS | |
Retrocopy | AAIADKKEIA*VKEQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00104p00132470 | 2 retrocopies |
retro_atri_18, retro_atri_48 ,
|