>retro_bole_14
ATGGTGAAAGAGAGGCTCAACGAGTTACCAGATGAACTGATCGTGACGATACTCTCAAAGCTTCCGACGTTTAAAGAAAG
CGTTGCAACACGTCTCATATCAAGACGGTACGAGGATCCTTGGAACCTTGCGCAGGACGTCACGCTTGAAGATAACGATG
AGGAGAGTGTCATGACGTTTCTCTATGGATATTTTTTGTCTAACGATGCTCCAGCTCTACAGAGGTTGCGTCTCAAGCTT
ACCCGGAAACATTCGGCTTCAGACATCGACTTTTGGGTTCAAACCGCGGTTAACCGAAACGTGAGAAAGCTGAGATTCGA
CTTGTCTGGTGGAACCCTAGAACTGCCGAGTTGCTTGAGCACATGCACAACCCTAAAATCGTTGATACTACGTGACGTAC
TTATCGAGGCTGTTCCTTGGGGTTTTCGTTTGCCATCTCTCAGAAGTCTACACCTTTTCTCGGTTAACTTCTCGATTGGT
GATTCCGTTGCAAATCTTTTAAAAATCTGCCCCCATCTTGAATATTTGGTTTTAAACCAAATCAGATATGATGTGGACCA
TGTGGATACTGAGTTTGCTCCACTTCGGTTCTTCTTATCATCACTCAAAAGTCTTCACCTTTGCCCGGTTATATTCTCCG
GCAAAAATCCCGTTACACGTTTTTTACGTAGCTGTCCGGTTCTTGAAACTTTGGTTATAAACGAAATCAAATGTGCCTAC
GAGATGTTCGAGGTTGTTTTTCCACCAAGATCTTGTCTGTCATCATCACTCAAAACCCTACACCTTTTTTCGGTTAACTT
CTCGAGTGATGAATCTGTTGTAAAGCTTTTAGAAAATTGTAAGGCTCTTGAAGACTTGGTCATAACCCGAACCAGAGATG
ACAATGTGTGGTTATTCAATATCACCGTGCCTACTCTCAAGAGCTTATCTATTAATAACGCGAAGGTGAAACGCGCCGAT
GCTCCTGGGTTTGTTATAAATGCTCCTAATTTGGAGAGATTGAGCATTAAGGATACCGTCAGTAACTTTCTAATGTTTGG
ATATATGCCCGAGGTGACCACGGCAAATATTGAGGCTGTTTGTGACCAATCTGAAAATTTTATAGGGTCTCTTACCTTCA
TCCAACATCTGTCTCTCTGTTCTCCAACGTCAAAGACTCCATATACTAGCGGCACTGTCTTCTTCTTCCTCGAACATCTA
GAGCTATGTACGTGTTCTGCTAGATGGGCGAAACTACTTGGCTCTATACTCAATGACGCTCCAAGACTTCAGTCTATCAA
GCTTAAGTCGAAATGTAGCGCTCCTTTCAAGCGTCCGTTGGAACTCTGGACCGAACCAACAGTTGTTCCAGAATGTTTAC
TGAAGCATCTTGAGATCTTGGAATGGAGAGAATATGATGGCACAGAGCAAGAGAGGAAAGTGGCTGCGTACATACTAGGA
AACGCTACTTGTCTAAAGATGGCTACATTCTCGACAAGGTGCGGAGACAAATGTACAGAGTTGAAGAAAATGTCCAGAGT
TTCAGAGATATGTCAGTTAGTGTTTGAGTAA
ORF - retro_bole_14 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.84 % |
Parental protein coverage: |
65.1 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | SPSLKSLHLLSVNFSGDESFSKLIQRCPVLEDLVINKTRDDNVTIFNINAPSLRSLSIDNSTGERTYVEE |
| S.SLK.LHL.SVNFS.DES..KL...C..LEDLVI..TRDDNV..FNI..P.L.SLSI.N....R..... |
Retrocopy | SSSLKTLHLFSVNFSSDESVVKLLENCKALEDLVITRTRDDNVWLFNITVPTLKSLSINNAKVKRA---D |
|
Parental | NHGFVINAPSLEKMNFKDTFSNCLVFEHMPEVIEANIHVICGQPENFIGSLTSICHLSLCSLSSETPYPS |
| ..GFVINAP.LE....KDT.SN.L.F..MPEV..ANI...C.Q.ENFIGSLT.I.HLSLCS..S.TPY.S |
Retrocopy | APGFVINAPNLERLSIKDTVSNFLMFGYMPEVTTANIEAVCDQSENFIGSLTFIQHLSLCSPTSKTPYTS |
|
Parental | GTTFPYLEHLELCTRCAGWANLLVCILKDAPTLKYLKLKSQHGAHYNHPMILWKEPTADPECLSTHLEIM |
| GT.F..LEHLELCT..A.WA.LL..IL.DAP.L...KLKS...A....P..LW.EPT..PECL..HLEI. |
Retrocopy | GTVFFFLEHLELCTCSARWAKLLGSILNDAPRLQSIKLKSKCSAPFKRPLELWTEPTVVPECLLKHLEIL |
|
Parental | EWRQYEGTEQERSMAAYILANATCLKTATFSTRCGDKHHNMLRKLKNLNRVSE |
| EWR.Y.GTEQER..AAYIL.NATCLK.ATFSTRCGDK....L.K......... |
Retrocopy | EWREYDGTEQERKVAAYILGNATCLKMATFSTRCGDK-CTELKKMSRVSEICQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_14 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.