>retro_bole_17
ATGGCCACTGCTTCAGGTGCTTTTAAGTCTAGGGCAAATCACAGGAAGCAAATAGAATTAGAAGAAGCTCGTAAAGCTGG
GCTTGCTCCAGCAGAAGTAGATGAGGATGGAAAGGAAATCAATCCTCACATACCTCAGTACATGTCCTCTGCTCCATGGT
ATCTCAACTCTAAGAAACCGAGCTTGAAGCATCAAAGGAACTGGAAGAATGATCTCAATAGCAAAAGTACATGCTACGAC
AGAGGCGCAAAGATGTTTCAAGCTGAAAAATACAGGAAGAAAGCATGTCAAAACTGTGGTGCAATGTCTCATGATGTGAA
ATCATGTATGTATAGACCTCGTAAGGTCGGAGCCAAATTCACAAACATGTACATTGCACCGGATGAGAAGGTCGAGAGTC
TGAAACTCGACTATGCTGCCAAGAGGGACCGATGGAACGGTTATGATACTTCAGACTACCACCGTGTGGTAGAGCGCTAT
GAAGCAAGAGAGAATGCACGAAAGAAGTACCTAAAGGAGCAGAAGATTAAGAAACTAGAAGAGAATGATGGAGACGAAGA
TGAAGACGACGACGGCTTAAGAGTGGATGAAGCCAAGGTTGATGAGAGCAAGCAGATGGACTTTGCAAAGGTAGAAAAGC
GTGTTAGAACAAGTGGTGGTGGTAGCACAGGAACTGTAAGGAATCTACGTATCAGGGAAGACACTGCCAAGTATCTATTG
AACCTTGATGTCAACTCGGCTCACTACGACCCTAAAACAAGATCCATGCGTGAGGACCCGCTTCCAAATACAGATCCGAA
TGAGAAATTTTATTTGGGAGATAATCATTATAGAAACAGTGGGCAGGCTCTAGAGTTCAAACAGATGAACATCCACTCAT
GGGAAGCTTTTGACAAGGGACAAGACACGCATATGCAAGCGGCTCCATCCCAAGCTGAGTTGCTCTACAGGAACTTTAAG
GATGCTAAGGCCAAACTGATATCTCAAACAAAGGACTCACTTATGGAGAAGTATGGGAATGCTTCCACAGAGGATGACAT
CCCCATGGAGATTTTGCTTGGGCAAAGCGAAAGACAAGTAGAGTATGACCGTTCAGGGAGGATTATAAAGGGACAGGAGG
TGATACTTCCAAAGAGCAGATACGAAGAAGATGTTTATGCTAACAATCACACTAGTGTTTGGGGCTCATGGTGGAAAGAA
CAGCAGTGGGGATATAAATGTTGCAAGCAAACCATTCGCAATAGCTACTGTACAGGTTCTTCTGGAATTGACGCTGCAGA
GGCTTCCCTTGATCTGATGAACGCTAATATTGTTCGCACTGAATTGAGACCAAATACGGTTGAAGAGAAGAGAATGGCAA
CGTGGGGAACTGACATCCCTGGTGATTTGGAATTGAACAAGGATGTACTTTCTAATGCTCTTAAAAAGGAGGATGAGCTT
AAGAGAGAAGAAAAAGATGAGAGGAAACGAAAATACAATGTCAAATACAACAATGATGTGACTGTGGAAGAGATGGAAGC
TTATAGGATGAAGAGAGCTCACCACGAGGATCCAATGAAAGAGTTCCTCTGA
ORF - retro_bole_17 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
79.4 % |
Parental protein coverage: |
68.04 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | KEQQIKKLEEKNNNQEGDDAASDGDEEDDDLRVDEAKVDESRQMDFAKVEKRVRTTGGGSTGTVRNLRIR |
| .E...KK...............D.DE.DD.LRVDEAKVDES.QMDFAKVEKRVRT.GGGSTGTVRNLRIR |
Retrocopy | RENARKKYLKEQKIKKLEENDGDEDEDDDGLRVDEAKVDESKQMDFAKVEKRVRTSGGGSTGTVRNLRIR |
|
Parental | EDTAKYLLNLDINSAHYDPKTRSMREDPLPDADPNDKFYLGDNQYRNSGQALEFKQMNIHSWEAFDKGQD |
| EDTAKYLLNLD.NSAHYDPKTRSMREDPLP..DPN.KFYLGDN.YRNSGQALEFKQMNIHSWEAFDKGQD |
Retrocopy | EDTAKYLLNLDVNSAHYDPKTRSMREDPLPNTDPNEKFYLGDNHYRNSGQALEFKQMNIHSWEAFDKGQD |
|
Parental | MHMQAAPSQAELLYKNFKVAKDKLKTHTKDTIMEKYGNASTEDEIPMELLLGQSERQVEYDRAGRIIKGQ |
| .HMQAAPSQAELLY.NFK.AK.KL...TKD..MEKYGNASTED.IPME.LLGQSERQVEYDR.GRIIKGQ |
Retrocopy | THMQAAPSQAELLYRNFKDAKAKLISQTKDSLMEKYGNASTEDDIPMEILLGQSERQVEYDRSGRIIKGQ |
|
Parental | EVILPKSKYEEDVLANNHTTVWGSWWRDHQWGYRCCQQTIRNSYCTGSAGIEAAEASLDLMKANIARKEA |
| EVILPKS.YEEDV.ANNHT.VWGSWW...QWGY.CC.QTIRNSYCTGS.GI.AAEASLDLM.ANI.R.E. |
Retrocopy | EVILPKSRYEEDVYANNHTSVWGSWWKEQQWGYKCCKQTIRNSYCTGSSGIDAAEASLDLMNANIVRTEL |
|
Parental | CEDSPKKVEEKKMAAWGTDVPEDLELNEEALANALKKEDERKREEKDERKRKYNVKYTNDVTPEEMEAYR |
| ....P..VEEK.MA.WGTD.P.DLELN...L.NALKKEDE.KREEKDERKRKYNVKY.NDVT.EEMEAYR |
Retrocopy | ---RPNTVEEKRMATWGTDIPGDLELNKDVLSNALKKEDELKREEKDERKRKYNVKYNNDVTVEEMEAYR |
|
Parental | MKRVHHEDPMKDFM |
| MKR.HHEDPMK.F. |
Retrocopy | MKRAHHEDPMKEFL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_17 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.