RetrogeneDB ID: | retro_bole_19 | ||
Retrocopylocation | Organism: | Brassica oleracea | |
Coordinates: | C8:36169380..36169743(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Bo8g102590 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bo9g174360 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGESAGSSSSW-AAISSSNIGFQLLKKQGWKEGTGLGVAEQGILVPVQAELKNNKRGLGAPAEKPTKRKA |
M.E....SSSW..AI.SSNIGF.LLKKQGWKEGTGLG...QGIL.P....LKNNKRGLG..AE...KRKA | |
Retrocopy | MVETSETSSSWDVAIDSSNIGFRLLKKQGWKEGTGLGISQQGILEPPRTVLKNNKRGLG--AENTNKRKA |
Parental | VKAADSGKE-EEVSKQSKKLSKKMRKLMEHEKQLQEKEFERAFFREFWPDNV |
.K..........V.K..KKLSKKMRK..EHEK.L.EKEFERAFFREFWPDNV | |
Retrocopy | AKPHSIATDSKQVAKKTKKLSKKMRKMIEHEKHLLEKEFERAFFREFWPDNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brassica oleracea | Bo9g174360 | 1 retrocopy |
retro_bole_19 ,
|
Brassica rapa | Bra009348 | 1 retrocopy | |
Arabidopsis lyrata | fgenesh1_pg.C_scaffold_6000712 | 1 retrocopy |